Variant report

Variant	rs1706788
Chromosome Location	chr15:45600143-45600144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45597883..45600169-chr15:45691864..45693737,3	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1055395	1.00[EUR][1000 genomes]
rs11070455	1.00[EUR][1000 genomes]
rs1145072	1.00[EUR][1000 genomes]
rs1145073	1.00[EUR][1000 genomes]
rs1145082	1.00[EUR][1000 genomes]
rs1145092	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1145094	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1153850	1.00[EUR][1000 genomes]
rs1153851	1.00[EUR][1000 genomes]
rs1153856	1.00[EUR][1000 genomes]
rs1153859	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1346265	1.00[EUR][1000 genomes]
rs1403319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706775	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1706782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706784	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706796	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1706797	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1719242	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1719249	0.83[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17215605	0.90[AMR][1000 genomes]
rs1874318	1.00[EUR][1000 genomes]
rs2217121	1.00[EUR][1000 genomes]
rs2413770	0.90[AMR][1000 genomes]
rs2433603	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2433604	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2433605	1.00[EUR][1000 genomes]
rs2433606	1.00[EUR][1000 genomes]
rs2433609	1.00[EUR][1000 genomes]
rs2433610	1.00[EUR][1000 genomes]
rs2453544	1.00[EUR][1000 genomes]
rs2461704	1.00[EUR][1000 genomes]
rs2467852	1.00[EUR][1000 genomes]
rs2467855	1.00[EUR][1000 genomes]
rs2467856	1.00[EUR][1000 genomes]
rs2467857	1.00[EUR][1000 genomes]
rs2486271	1.00[EUR][1000 genomes]
rs2486289	1.00[EUR][1000 genomes]
rs2486290	1.00[EUR][1000 genomes]
rs2668740	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2687513	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56166527	0.90[AMR][1000 genomes]
rs57553327	1.00[EUR][1000 genomes]
rs7163395	1.00[EUR][1000 genomes]
rs7163751	1.00[EUR][1000 genomes]
rs7164252	1.00[EUR][1000 genomes]
rs7169175	1.00[EUR][1000 genomes]
rs7173541	1.00[EUR][1000 genomes]
rs7179186	1.00[EUR][1000 genomes]
rs7179844	1.00[EUR][1000 genomes]
rs74009622	1.00[EUR][1000 genomes]
rs8023604	0.90[AMR][1000 genomes]
rs8028061	1.00[EUR][1000 genomes]
rs8033329	1.00[EUR][1000 genomes]
rs8040380	1.00[EUR][1000 genomes]
rs9806260	1.00[EUR][1000 genomes]
rs9972564	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45597200-45601800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:45598000-45600400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:45598600-45600400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:45598800-45600800	Enhancers	HepG2	liver
5	chr15:45599000-45600400	Enhancers	Liver	Liver
6	chr15:45599000-45600400	Enhancers	Fetal Intestine Large	intestine
7	chr15:45599000-45600400	Enhancers	Fetal Intestine Small	intestine
8	chr15:45599600-45600400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:45599600-45600400	Enhancers	Brain Substantia Nigra	brain
10	chr15:45599600-45600400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr15:45599600-45600400	Enhancers	Small Intestine	intestine
12	chr15:45599600-45600600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:45599600-45611000	Weak transcription	Right Atrium	heart
14	chr15:45599800-45600200	Enhancers	Duodenum Mucosa	Duodenum
15	chr15:45599800-45600400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:45599800-45600400	Enhancers	Brain Anterior Caudate	brain
17	chr15:45599800-45601000	Enhancers	Brain Hippocampus Middle	brain
18	chr15:45599800-45603000	Weak transcription	Stomach Mucosa	stomach
19	chr15:45600000-45600400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:45600000-45600400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:45600000-45600400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:45600000-45600400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr15:45600000-45600400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:45600000-45600600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:45600000-45601800	Weak transcription	Ovary	ovary
26	chr15:45600000-45602800	Weak transcription	Adipose Nuclei	Adipose

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