Variant report
Variant | rs1719249 |
---|---|
Chromosome Location | chr15:45615829-45615830 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1055395 | 1.00[EUR][1000 genomes] |
rs11070455 | 1.00[EUR][1000 genomes] |
rs1145072 | 1.00[EUR][1000 genomes] |
rs1145073 | 0.85[GIH][hapmap];1.00[EUR][1000 genomes] |
rs1145082 | 1.00[EUR][1000 genomes] |
rs1145092 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1145094 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1153850 | 1.00[EUR][1000 genomes] |
rs1153851 | 0.85[GIH][hapmap];1.00[EUR][1000 genomes] |
rs1153856 | 1.00[EUR][1000 genomes] |
rs1153859 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1288847 | 0.91[GIH][hapmap] |
rs1346265 | 1.00[EUR][1000 genomes] |
rs1403319 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1464558 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1648301 | 0.92[GIH][hapmap] |
rs16940558 | 0.92[GIH][hapmap] |
rs16941118 | 1.00[GIH][hapmap] |
rs16941127 | 1.00[GIH][hapmap] |
rs16941245 | 1.00[GIH][hapmap] |
rs16942796 | 1.00[GIH][hapmap] |
rs1706775 | 0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706781 | 0.95[AMR][1000 genomes] |
rs1706782 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706783 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706784 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706786 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706788 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706789 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706790 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706794 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706795 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706796 | 0.83[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1706797 | 0.83[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1719242 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17215605 | 0.85[AMR][1000 genomes] |
rs1874318 | 1.00[EUR][1000 genomes] |
rs2217121 | 1.00[EUR][1000 genomes] |
rs2413770 | 0.85[AMR][1000 genomes] |
rs2433603 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2433604 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2433605 | 0.85[GIH][hapmap];1.00[EUR][1000 genomes] |
rs2433606 | 1.00[EUR][1000 genomes] |
rs2433609 | 1.00[EUR][1000 genomes] |
rs2433610 | 1.00[EUR][1000 genomes] |
rs2453544 | 1.00[EUR][1000 genomes] |
rs2461704 | 1.00[EUR][1000 genomes] |
rs2467852 | 1.00[EUR][1000 genomes] |
rs2467855 | 1.00[EUR][1000 genomes] |
rs2467856 | 1.00[EUR][1000 genomes] |
rs2467857 | 0.85[GIH][hapmap];1.00[EUR][1000 genomes] |
rs2467873 | 0.91[GIH][hapmap] |
rs2486271 | 1.00[EUR][1000 genomes] |
rs2486289 | 0.85[GIH][hapmap];1.00[EUR][1000 genomes] |
rs2486290 | 1.00[EUR][1000 genomes] |
rs2668740 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2687513 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56166527 | 0.85[AMR][1000 genomes] |
rs57553327 | 1.00[EUR][1000 genomes] |
rs7163395 | 1.00[EUR][1000 genomes] |
rs7163751 | 1.00[EUR][1000 genomes] |
rs7164252 | 1.00[EUR][1000 genomes] |
rs7169175 | 1.00[EUR][1000 genomes] |
rs7173541 | 1.00[EUR][1000 genomes] |
rs7173715 | 0.92[GIH][hapmap] |
rs7179186 | 1.00[EUR][1000 genomes] |
rs7179844 | 1.00[EUR][1000 genomes] |
rs74009622 | 1.00[EUR][1000 genomes] |
rs8023604 | 0.85[AMR][1000 genomes] |
rs8028061 | 1.00[EUR][1000 genomes] |
rs8033329 | 1.00[EUR][1000 genomes] |
rs8039041 | 0.92[GIH][hapmap] |
rs8040380 | 1.00[EUR][1000 genomes] |
rs9806260 | 1.00[EUR][1000 genomes] |
rs9972443 | 1.00[GIH][hapmap] |
rs9972564 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916374 | chr15:45058112-45769052 | Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
2 | nsv932147 | chr15:45319178-45872076 | Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
3 | nsv869616 | chr15:45401411-45736209 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 76 gene(s) | inside rSNPs | diseases |
4 | nsv569315 | chr15:45446156-45772448 | Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
5 | nsv469721 | chr15:45608881-45788002 | Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
6 | nsv482380 | chr15:45608881-45788002 | Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
7 | nsv977713 | chr15:45611707-45620772 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:45613600-45622000 | Weak transcription | Pancreas | Pancrea |
2 | chr15:45613800-45618200 | Weak transcription | Fetal Brain Male | brain |
3 | chr15:45614200-45616000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
4 | chr15:45614200-45619000 | Weak transcription | Fetal Brain Female | brain |
5 | chr15:45615400-45616200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
6 | chr15:45615600-45616000 | Enhancers | Gastric | stomach |
7 | chr15:45615600-45616200 | Enhancers | Fetal Intestine Large | intestine |
8 | chr15:45615600-45616200 | Enhancers | Rectal Mucosa Donor 31 | rectum |
9 | chr15:45615600-45616200 | Enhancers | Stomach Mucosa | stomach |
10 | chr15:45615800-45616200 | Enhancers | Fetal Intestine Small | intestine |