Variant report

Variant	rs11071247
Chromosome Location	chr15:56387931-56387932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56206449..56208647-chr15:56387606..56390052,2	MCF-7	breast:
2	chr15:56386726..56388923-chr15:56388990..56391326,2	MCF-7	breast:
3	chr15:56282892..56284804-chr15:56387312..56388901,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10851602	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs2584688	0.81[ASW][hapmap]
rs2713942	0.81[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap]
rs4774846	0.82[AFR][1000 genomes]
rs55968075	0.83[AFR][1000 genomes]
rs9972586	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56381600-56391000	Strong transcription	HMEC	breast
2	chr15:56381600-56397000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:56382200-56399200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:56382600-56388400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:56382600-56391000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:56382800-56395800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:56383200-56388800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:56383200-56390200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:56383200-56390200	Strong transcription	Primary hematopoietic stem cells	blood
10	chr15:56383200-56395600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:56383400-56390600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:56383400-56395200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:56383600-56390600	Strong transcription	HSMM	muscle
14	chr15:56383600-56391000	Strong transcription	NH-A	brain
15	chr15:56383800-56389400	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr15:56383800-56390600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:56383800-56390600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:56383800-56394200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:56383800-56398400	Strong transcription	Dnd41	blood
20	chr15:56384000-56390600	Strong transcription	GM12878-XiMat	blood
21	chr15:56384000-56390800	Strong transcription	Primary B cells from cord blood	blood
22	chr15:56384000-56395800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:56384200-56391200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:56384600-56389600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:56384600-56390200	Weak transcription	Stomach Mucosa	stomach
26	chr15:56384600-56390600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:56384600-56395000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:56384800-56390600	Strong transcription	Fetal Thymus	thymus
29	chr15:56385000-56388800	Strong transcription	NHEK	skin
30	chr15:56385000-56389400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:56385000-56390800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:56385000-56394000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr15:56385000-56394800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:56385200-56388800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr15:56385200-56389400	Strong transcription	Fetal Kidney	kidney
36	chr15:56385200-56389600	Strong transcription	NHLF	lung
37	chr15:56385200-56390200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:56385200-56390600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:56385200-56391000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr15:56385400-56389600	Strong transcription	Brain Anterior Caudate	brain
41	chr15:56385400-56389800	Strong transcription	Placenta	Placenta
42	chr15:56385400-56390000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:56385400-56390200	Strong transcription	NHDF-Ad	bronchial
44	chr15:56385400-56390400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:56385400-56390400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr15:56385400-56390600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:56385400-56390600	Strong transcription	Adipose Nuclei	Adipose
48	chr15:56385400-56390600	Strong transcription	Fetal Intestine Large	intestine
49	chr15:56385400-56390600	Strong transcription	HUVEC	blood vessel
50	chr15:56385400-56390800	Strong transcription	Primary T cells from cord blood	blood

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