The 2.0 version of rSNPBase

Variant report

Variant rs55968075
Chromosome Location chr15:56504171-56504172
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:56453600-56515000 Weak transcription NHLF lung
2 chr15:56459200-56511000 Weak transcription Esophagus oesophagus
3 chr15:56466000-56514200 Weak transcription Duodenum Mucosa Duodenum
4 chr15:56467000-56511600 Weak transcription Fetal Intestine Small intestine
5 chr15:56480200-56515400 Weak transcription Hela-S3 cervix
6 chr15:56485600-56521200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr15:56493200-56515400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr15:56495200-56504400 Weak transcription Fetal Intestine Large intestine
9 chr15:56496600-56515200 Weak transcription Left Ventricle heart
10 chr15:56497400-56505000 Weak transcription HSMMtube muscle
11 chr15:56498200-56508000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr15:56498400-56504400 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr15:56498400-56514400 Weak transcription NHEK skin
14 chr15:56498400-56515200 Weak transcription HUVEC blood vessel
15 chr15:56500600-56513000 Weak transcription HMEC breast
16 chr15:56500600-56515200 Weak transcription Ovary ovary
17 chr15:56500800-56507600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr15:56500800-56508000 Weak transcription Right Ventricle heart
19 chr15:56500800-56514400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr15:56500800-56515200 Weak transcription Thymus Thymus
21 chr15:56501000-56504400 Weak transcription HSMM muscle
22 chr15:56501400-56504400 Weak transcription K562 blood
23 chr15:56501400-56507800 Weak transcription Muscle Satellite Cultured Cells --
24 chr15:56501400-56508000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr15:56501600-56507600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr15:56501600-56508400 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr15:56501600-56511800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr15:56501800-56505800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr15:56502000-56504400 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr15:56502000-56506400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr15:56502000-56507600 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr15:56502000-56507800 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr15:56502200-56508400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr15:56502400-56514600 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr15:56502600-56505800 ZNF genes & repeats GM12878-XiMat blood
36 chr15:56502600-56506000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr15:56502600-56507600 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr15:56502800-56508000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr15:56503000-56505800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr15:56503200-56505000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr15:56503200-56505400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
42 chr15:56503200-56506400 ZNF genes & repeats Primary T cells from cord blood blood
43 chr15:56503400-56504200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr15:56503400-56506400 ZNF genes & repeats Primary B cells from cord blood blood
45 chr15:56503600-56504400 ZNF genes & repeats Brain Hippocampus Middle brain
46 chr15:56503600-56504800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
47 chr15:56503600-56505800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr15:56503600-56507600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr15:56503800-56504200 ZNF genes & repeats Primary T helper 17 cells PMA-I stimulated --
50 chr15:56503800-56504200 ZNF genes & repeats Psoas Muscle Psoas

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Last update: Aug 31, 2015