Variant report

Variant	rs2034019
Chromosome Location	chr15:56423455-56423456
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56418167..56420878-chr15:56422690..56425672,3	K562	blood:
2	chr15:56407805..56409350-chr15:56422499..56425257,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10851602	1.00[AMR][1000 genomes]
rs1372751	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	1.00[AMR][1000 genomes]
rs4774234	1.00[AMR][1000 genomes]
rs4774846	1.00[AMR][1000 genomes]
rs55968075	1.00[AMR][1000 genomes]
rs58771650	1.00[AMR][1000 genomes]
rs7178214	1.00[AMR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411519	1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73411529	1.00[AMR][1000 genomes]
rs8025379	1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	1.00[AMR][1000 genomes]
rs8042687	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56433000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
3	chr15:56388800-56441600	Weak transcription	Lung	lung
4	chr15:56411400-56424000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:56411600-56436800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:56413200-56423800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr15:56413400-56441600	Weak transcription	Spleen	Spleen
8	chr15:56416000-56433200	Weak transcription	Hela-S3	cervix
9	chr15:56416200-56433000	Weak transcription	Thymus	Thymus
10	chr15:56416200-56434800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:56416200-56437800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:56416200-56441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:56416400-56434600	Weak transcription	NH-A	brain
14	chr15:56417200-56423800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr15:56418000-56424000	ZNF genes & repeats	GM12878-XiMat	blood
16	chr15:56418800-56431600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:56419200-56424400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:56419200-56433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:56419200-56433000	Weak transcription	Fetal Thymus	thymus
20	chr15:56419200-56433000	Weak transcription	HSMM	muscle
21	chr15:56419200-56434200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr15:56419200-56438400	Weak transcription	Psoas Muscle	Psoas
23	chr15:56419400-56432800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:56419400-56432800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:56419400-56432800	Weak transcription	Osteobl	bone
26	chr15:56419400-56433000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:56419400-56433000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:56419400-56433200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:56419400-56434000	Weak transcription	HMEC	breast
30	chr15:56419600-56426000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr15:56419600-56433000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr15:56419600-56434400	Weak transcription	NHDF-Ad	bronchial
33	chr15:56419600-56439000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr15:56420000-56424000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:56420200-56424600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:56420400-56434000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:56420400-56434800	Weak transcription	HSMMtube	muscle
38	chr15:56420600-56423800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:56420800-56423800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:56420800-56423800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:56420800-56433000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:56421000-56432600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr15:56421000-56433000	Weak transcription	Liver	Liver
44	chr15:56421000-56433000	Weak transcription	NHEK	skin
45	chr15:56421000-56433400	Weak transcription	Brain Angular Gyrus	brain
46	chr15:56421200-56423800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:56421200-56432800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:56421600-56423600	Weak transcription	Fetal Intestine Small	intestine
49	chr15:56421600-56431600	Weak transcription	Placenta	Placenta
50	chr15:56421600-56437800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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