Variant report

Variant	rs8025379
Chromosome Location	chr15:56435375-56435376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10851602	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1372751	1.00[AMR][1000 genomes]
rs2034019	1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs4774234	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4774846	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55968075	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58771650	1.00[AMR][1000 genomes]
rs7178214	1.00[AMR][1000 genomes]
rs7181720	1.00[AFR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411519	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73411529	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042687	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
2	chr15:56388800-56441600	Weak transcription	Lung	lung
3	chr15:56411600-56436800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:56413400-56441600	Weak transcription	Spleen	Spleen
5	chr15:56416200-56437800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:56416200-56441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:56419200-56438400	Weak transcription	Psoas Muscle	Psoas
8	chr15:56419600-56439000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:56421600-56437800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:56422200-56440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:56424800-56453800	Weak transcription	Brain Substantia Nigra	brain
12	chr15:56427000-56439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:56429200-56437200	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:56429400-56442600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:56429600-56437800	Weak transcription	Small Intestine	intestine
16	chr15:56429600-56441200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:56431600-56442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:56431800-56436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:56431800-56437800	Weak transcription	Ovary	ovary
20	chr15:56432000-56438000	Weak transcription	Right Ventricle	heart
21	chr15:56432400-56436600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:56432400-56437800	Weak transcription	Fetal Heart	heart
23	chr15:56432600-56435400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:56432600-56435400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:56432600-56435400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr15:56432600-56435800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:56432600-56436200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:56432600-56436400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:56432800-56435400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr15:56432800-56435400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:56432800-56435400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:56432800-56435400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:56432800-56435400	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:56432800-56435400	Strong transcription	Osteobl	bone
35	chr15:56432800-56435600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:56432800-56435800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr15:56432800-56436600	Strong transcription	Primary B cells from cord blood	blood
38	chr15:56433000-56435400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:56433000-56435400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr15:56433000-56435400	Strong transcription	Primary T cells from cord blood	blood
41	chr15:56433000-56435400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:56433000-56435400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:56433000-56435400	Strong transcription	Adipose Nuclei	Adipose
44	chr15:56433000-56435400	Strong transcription	Fetal Thymus	thymus
45	chr15:56433000-56435400	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr15:56433000-56435400	Strong transcription	A549	lung
47	chr15:56433000-56435400	ZNF genes & repeats	GM12878-XiMat	blood
48	chr15:56433000-56435400	Strong transcription	HSMM	muscle
49	chr15:56433000-56435600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:56433000-56435800	Strong transcription	Brain Germinal Matrix	brain

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