Variant report

Variant	rs73411519
Chromosome Location	chr15:56530784-56530785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56529793..56531409-chr15:56531688..56534062,2	MCF-7	breast:
2	chr15:56516120..56519450-chr15:56528763..56530830,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10851602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1372751	1.00[AMR][1000 genomes]
rs2034019	1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	1.00[AMR][1000 genomes]
rs4774234	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4774846	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55968075	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56824866	1.00[AMR][1000 genomes]
rs58771650	1.00[AMR][1000 genomes]
rs61181469	1.00[AMR][1000 genomes]
rs7171270	1.00[AMR][1000 genomes]
rs7178214	1.00[AMR][1000 genomes]
rs7181720	0.92[AFR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73411529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413930	1.00[AMR][1000 genomes]
rs73413935	1.00[AMR][1000 genomes]
rs73413939	1.00[AMR][1000 genomes]
rs73413960	1.00[AMR][1000 genomes]
rs73413962	1.00[AMR][1000 genomes]
rs73413974	1.00[AMR][1000 genomes]
rs73413982	1.00[AMR][1000 genomes]
rs8025379	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036425	1.00[AMR][1000 genomes]
rs8042687	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3311802	chr15:56529020-56532537	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3311803	chr15:56529020-56532537	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv827341	chr15:56529146-56532251	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56508000-56534400	Weak transcription	Fetal Heart	heart
2	chr15:56509000-56533600	Weak transcription	Osteobl	bone
3	chr15:56514000-56535000	Weak transcription	Pancreas	Pancrea
4	chr15:56514600-56532400	Weak transcription	HSMMtube	muscle
5	chr15:56514800-56534800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:56521400-56532000	ZNF genes & repeats	GM12878-XiMat	blood
7	chr15:56522800-56533600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:56524600-56532000	Weak transcription	NHEK	skin
9	chr15:56524600-56532400	Weak transcription	HSMM	muscle
10	chr15:56524600-56533800	Weak transcription	Aorta	Aorta
11	chr15:56524600-56534800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:56524800-56531800	Weak transcription	NH-A	brain
13	chr15:56524800-56532000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:56524800-56533600	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:56524800-56533600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:56524800-56533800	Weak transcription	Ovary	ovary
17	chr15:56524800-56534800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:56524800-56534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:56524800-56534800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:56524800-56534800	Weak transcription	Small Intestine	intestine
21	chr15:56524800-56535000	Weak transcription	Esophagus	oesophagus
22	chr15:56525000-56533400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:56525000-56533600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:56525200-56531000	Weak transcription	Left Ventricle	heart
25	chr15:56525200-56531200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:56525400-56533600	Weak transcription	Brain Substantia Nigra	brain
27	chr15:56525400-56534800	Weak transcription	Placenta	Placenta
28	chr15:56525400-56535000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:56525600-56532400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:56525600-56533600	Weak transcription	Fetal Stomach	stomach
31	chr15:56525600-56535000	Weak transcription	Lung	lung
32	chr15:56525800-56532000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:56525800-56533200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:56525800-56533400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:56525800-56533800	Weak transcription	Fetal Muscle Leg	muscle
36	chr15:56526000-56532400	Weak transcription	Brain Germinal Matrix	brain
37	chr15:56526000-56532400	Weak transcription	NHDF-Ad	bronchial
38	chr15:56526000-56533400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:56526000-56533400	Weak transcription	Fetal Intestine Small	intestine
40	chr15:56526000-56533400	Weak transcription	Thymus	Thymus
41	chr15:56526000-56533600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:56526000-56533600	Weak transcription	Brain Angular Gyrus	brain
43	chr15:56526000-56533600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:56526200-56532400	Weak transcription	Fetal Lung	lung
45	chr15:56526200-56533200	Weak transcription	Hela-S3	cervix
46	chr15:56526200-56534200	Weak transcription	Fetal Intestine Large	intestine
47	chr15:56526400-56532400	Weak transcription	Primary T cells from cord blood	blood
48	chr15:56526400-56533600	Weak transcription	HepG2	liver
49	chr15:56526600-56530800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr15:56526600-56532200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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