Variant report
| Variant | rs8042687 |
|---|---|
| Chromosome Location | chr15:56622752-56622753 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:56620302..56622977-chr15:56634922..56636992,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10851602 | 1.00[AMR][1000 genomes] |
| rs1372751 | 1.00[AMR][1000 genomes] |
| rs2034019 | 1.00[AMR][1000 genomes] |
| rs2584688 | 1.00[AMR][1000 genomes] |
| rs2713942 | 1.00[AMR][1000 genomes] |
| rs4774234 | 1.00[AMR][1000 genomes] |
| rs55968075 | 1.00[AMR][1000 genomes] |
| rs56824866 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58771650 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61181469 | 1.00[AMR][1000 genomes] |
| rs7171270 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7178214 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73411509 | 1.00[AMR][1000 genomes] |
| rs73411519 | 1.00[AMR][1000 genomes] |
| rs73411525 | 1.00[AMR][1000 genomes] |
| rs73411529 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413930 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413935 | 1.00[AMR][1000 genomes] |
| rs73413939 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413960 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413962 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413974 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413982 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73415841 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73417805 | 1.00[AMR][1000 genomes] |
| rs8025379 | 1.00[AMR][1000 genomes] |
| rs8030570 | 1.00[AMR][1000 genomes] |
| rs8032923 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8036425 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:56613400-56623400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr15:56620800-56637600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
