Variant report

Variant	rs73413930
Chromosome Location	chr15:56636817-56636818
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1372751	1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	1.00[AMR][1000 genomes]
rs4774234	1.00[AMR][1000 genomes]
rs55968075	1.00[AMR][1000 genomes]
rs56824866	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58771650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61181469	1.00[AMR][1000 genomes]
rs7171270	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411519	1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73411529	1.00[AMR][1000 genomes]
rs73413935	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413962	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415841	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417805	1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56620800-56637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56633800-56637600	Weak transcription	Gastric	stomach
3	chr15:56635000-56638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:56635200-56638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:56635200-56642600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:56635400-56637400	Weak transcription	Stomach Mucosa	stomach
7	chr15:56635400-56638400	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links