Variant report

Variant	rs58771650
Chromosome Location	chr15:56623514-56623515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10851602	1.00[AMR][1000 genomes]
rs1372751	1.00[AMR][1000 genomes]
rs2034019	1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	1.00[AMR][1000 genomes]
rs4774234	1.00[AMR][1000 genomes]
rs55968075	1.00[AMR][1000 genomes]
rs56824866	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61181469	1.00[AMR][1000 genomes]
rs7171270	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411519	1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73411529	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413935	1.00[AMR][1000 genomes]
rs73413939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413974	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413982	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415841	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417805	1.00[AMR][1000 genomes]
rs8025379	1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56620800-56637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56623400-56623600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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