Variant report

Variant	rs8036425
Chromosome Location	chr15:56658717-56658718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56535922..56537613-chr15:56658440..56660656,2	MCF-7	breast:
2	chr15:56535634..56538355-chr15:56656475..56659064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1372751	1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	1.00[AMR][1000 genomes]
rs4774234	1.00[AMR][1000 genomes]
rs55968075	1.00[AMR][1000 genomes]
rs56824866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58771650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61181469	1.00[AMR][1000 genomes]
rs7171270	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178214	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411519	1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73411529	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413930	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413935	1.00[AMR][1000 genomes]
rs73413939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415841	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417805	1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042687	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56656800-56658800	Active TSS	H1 Cell Line	embryonic stem cell
2	chr15:56656800-56659000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr15:56656800-56659400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr15:56656800-56659400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr15:56656800-56659600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:56657000-56658800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr15:56657000-56658800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:56657000-56658800	Active TSS	Ovary	ovary
9	chr15:56657000-56658800	Active TSS	Rectal Smooth Muscle	rectum
10	chr15:56657000-56659400	Active TSS	Fetal Brain Male	brain
11	chr15:56657000-56659600	Active TSS	Fetal Brain Female	brain
12	chr15:56657200-56663200	Active TSS	GM12878-XiMat	blood
13	chr15:56657400-56658800	Active TSS	HSMMtube	muscle
14	chr15:56657400-56658800	Active TSS	NH-A	brain
15	chr15:56657400-56659000	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr15:56657400-56659600	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr15:56657400-56659800	Active TSS	Duodenum Mucosa	Duodenum
18	chr15:56657800-56658800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:56658000-56658800	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr15:56658000-56658800	Flanking Active TSS	Fetal Lung	lung
21	chr15:56658000-56662800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:56658200-56658800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:56658200-56658800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr15:56658200-56658800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:56658200-56658800	Flanking Active TSS	Hela-S3	cervix
26	chr15:56658200-56658800	Flanking Active TSS	NHEK	skin
27	chr15:56658200-56659400	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr15:56658200-56659400	Weak transcription	Psoas Muscle	Psoas
29	chr15:56658200-56659800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:56658200-56661400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:56658200-56661400	Weak transcription	Small Intestine	intestine
32	chr15:56658200-56675400	Weak transcription	Pancreas	Pancrea
33	chr15:56658400-56658800	Enhancers	Primary T cells from cord blood	blood
34	chr15:56658400-56658800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:56658400-56658800	Enhancers	Liver	Liver
36	chr15:56658400-56658800	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr15:56658400-56658800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr15:56658400-56658800	Enhancers	Fetal Heart	heart
39	chr15:56658400-56658800	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr15:56658400-56658800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr15:56658400-56658800	Flanking Active TSS	A549	lung
42	chr15:56658400-56658800	Flanking Active TSS	HMEC	breast
43	chr15:56658400-56658800	Enhancers	NHLF	lung
44	chr15:56658400-56659000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:56658400-56659000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:56658400-56659400	Enhancers	Brain Cingulate Gyrus	brain
47	chr15:56658400-56659800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr15:56658400-56660000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:56658600-56658800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:56658600-56658800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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