Variant report

Variant	rs73411529
Chromosome Location	chr15:56542848-56542849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10851602	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1372751	1.00[AMR][1000 genomes]
rs2034019	1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	1.00[AMR][1000 genomes]
rs4774234	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4774846	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55968075	1.00[AMR][1000 genomes]
rs56824866	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58771650	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61181469	1.00[AMR][1000 genomes]
rs7171270	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178214	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181720	0.81[AFR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73413930	1.00[AMR][1000 genomes]
rs73413935	1.00[AMR][1000 genomes]
rs73413939	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413960	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413962	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413974	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413982	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415841	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025379	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036425	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042687	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56538200-56546600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56538400-56544000	Weak transcription	Fetal Brain Male	brain
3	chr15:56538400-56546000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:56538600-56543400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:56538800-56544000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:56538800-56544000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:56538800-56546400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:56538800-56546600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:56540600-56543200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:56540800-56544200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:56541200-56543000	Weak transcription	K562	blood
12	chr15:56541200-56543800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:56541400-56543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:56541400-56543800	Weak transcription	Stomach Mucosa	stomach
15	chr15:56541400-56544200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:56541600-56544000	Weak transcription	Fetal Intestine Large	intestine
17	chr15:56542400-56543600	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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