Variant report

Variant	rs7181720
Chromosome Location	chr15:56443030-56443031
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10851602	0.91[AFR][1000 genomes]
rs4774234	0.82[AFR][1000 genomes]
rs4774846	0.91[AFR][1000 genomes]
rs55968075	0.84[AFR][1000 genomes]
rs73411519	0.92[AFR][1000 genomes]
rs73411529	0.81[AFR][1000 genomes]
rs8025379	1.00[AFR][1000 genomes]
rs8032923	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56424800-56453800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:56433800-56464000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:56435200-56458800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:56435400-56443400	Weak transcription	Placenta	Placenta
5	chr15:56435400-56444200	Weak transcription	Brain Anterior Caudate	brain
6	chr15:56435400-56444600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:56435400-56444600	Weak transcription	Brain Angular Gyrus	brain
8	chr15:56435400-56446800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr15:56435400-56447200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:56435400-56461000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:56435400-56462400	Weak transcription	Fetal Thymus	thymus
12	chr15:56435400-56465200	Weak transcription	Thymus	Thymus
13	chr15:56435800-56444200	Weak transcription	Fetal Intestine Large	intestine
14	chr15:56435800-56454000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:56436000-56448600	Weak transcription	K562	blood
16	chr15:56436000-56458000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:56436400-56455800	Weak transcription	Liver	Liver
18	chr15:56436600-56443600	Weak transcription	Dnd41	blood
19	chr15:56436600-56458800	Weak transcription	Primary B cells from cord blood	blood
20	chr15:56438200-56443600	Weak transcription	Osteobl	bone
21	chr15:56438600-56444200	Weak transcription	Left Ventricle	heart
22	chr15:56439000-56443200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:56440600-56443400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr15:56440800-56445400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:56441000-56444600	Weak transcription	Fetal Lung	lung
26	chr15:56441000-56453200	Weak transcription	A549	lung
27	chr15:56441000-56461400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr15:56441400-56445200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:56442000-56457200	Weak transcription	HMEC	breast
30	chr15:56442000-56458000	Weak transcription	HepG2	liver
31	chr15:56442000-56462600	Weak transcription	HSMM	muscle
32	chr15:56442200-56443200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:56442200-56451000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:56442200-56457200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:56442600-56443200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr15:56442600-56443200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr15:56442600-56470600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:56442800-56443200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr15:56442800-56450800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:56442800-56454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:56442800-56462600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:56443000-56445200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:56443000-56446000	Weak transcription	Primary T cells from cord blood	blood

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