Variant report

Variant	rs4774846
Chromosome Location	chr15:56417031-56417032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10851602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11071247	0.82[AFR][1000 genomes]
rs1372751	1.00[AMR][1000 genomes]
rs2034019	1.00[AMR][1000 genomes]
rs2584688	1.00[AMR][1000 genomes]
rs2713942	1.00[AMR][1000 genomes]
rs4774234	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55968075	1.00[AMR][1000 genomes]
rs7181720	0.91[AFR][1000 genomes]
rs73411509	1.00[AMR][1000 genomes]
rs73411519	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411525	1.00[AMR][1000 genomes]
rs73411529	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025379	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030570	1.00[AMR][1000 genomes]
rs8032923	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9972586	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56418400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:56388800-56433000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
4	chr15:56388800-56441600	Weak transcription	Lung	lung
5	chr15:56389400-56418400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:56389400-56418400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:56390600-56417400	Weak transcription	Adipose Nuclei	Adipose
8	chr15:56390600-56418000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:56390800-56418600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:56392600-56417200	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:56394000-56418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:56395000-56418200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr15:56408000-56418200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:56409400-56418400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:56410800-56419400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:56411400-56424000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:56411600-56436800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:56411800-56418600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:56411800-56419600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:56412000-56418200	Weak transcription	Gastric	stomach
21	chr15:56412200-56420400	Weak transcription	Colonic Mucosa	Colon
22	chr15:56412400-56423200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr15:56412600-56419600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:56412600-56422000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:56412800-56418400	Weak transcription	Psoas Muscle	Psoas
26	chr15:56413000-56417600	Weak transcription	NHEK	skin
27	chr15:56413200-56423800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr15:56413400-56418600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:56413400-56419400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr15:56413400-56441600	Weak transcription	Spleen	Spleen
31	chr15:56413600-56421800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:56413800-56418400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:56413800-56418400	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:56414000-56417200	Strong transcription	HMEC	breast
35	chr15:56414000-56418400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:56414000-56418600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:56414000-56419200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:56414200-56417400	Strong transcription	Primary T cells from cord blood	blood
39	chr15:56414200-56417800	Strong transcription	HSMM	muscle
40	chr15:56414200-56419000	Weak transcription	Osteobl	bone
41	chr15:56414200-56419400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:56414400-56417200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:56414400-56417600	Strong transcription	Duodenum Mucosa	Duodenum
44	chr15:56414400-56418000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:56414400-56418400	Strong transcription	Liver	Liver
46	chr15:56414400-56418400	Strong transcription	Dnd41	blood
47	chr15:56414400-56419200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:56414600-56418200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr15:56414600-56418200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:56414800-56417200	Strong transcription	A549	lung

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