Variant report

Variant	rs9972586
Chromosome Location	chr15:56384639-56384640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62554847..62555619-chr15:56384327..56384954,2	NB4	blood:
2	chr15:56384379..56386985-chr15:56534620..56537262,4	MCF-7	breast:

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	RFX7	hsa-miR-26b-5p	chr15:56384623-56384645

Variant related genes	Relation type
ENSG00000181827	Chromatin interaction
ENSG00000151575	Chromatin interaction
ENSG00000185475	Chromatin interaction
RFX7	miRNA target site

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10851602	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs11071247	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2584688	0.81[ASW][hapmap]
rs2713942	0.81[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap]
rs4774846	0.82[AFR][1000 genomes]
rs55968075	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56369800-56385600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:56375000-56385000	Weak transcription	NHEK	skin
3	chr15:56375000-56385800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:56375000-56386000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:56375400-56385400	Weak transcription	Placenta	Placenta
6	chr15:56375600-56386200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:56378200-56385200	Weak transcription	Fetal Kidney	kidney
8	chr15:56378400-56385400	Weak transcription	Primary T cells from cord blood	blood
9	chr15:56378400-56385600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:56378400-56385600	Weak transcription	HSMMtube	muscle
11	chr15:56378600-56385600	Weak transcription	Aorta	Aorta
12	chr15:56378800-56386200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:56379000-56386600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:56379000-56386600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:56379200-56385400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:56379200-56385600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:56379200-56386400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:56379800-56385200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:56379800-56385800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:56379800-56385800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:56380000-56385000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr15:56380000-56385600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:56380200-56385200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:56380200-56386200	Weak transcription	Fetal Brain Male	brain
25	chr15:56380600-56385600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:56380600-56385800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:56380600-56385800	Weak transcription	Thymus	Thymus
28	chr15:56380800-56385600	Weak transcription	Fetal Stomach	stomach
29	chr15:56380800-56385600	Weak transcription	Hela-S3	cervix
30	chr15:56380800-56386400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:56381000-56385600	Weak transcription	Fetal Lung	lung
32	chr15:56381400-56385400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:56381600-56385400	Weak transcription	HUVEC	blood vessel
34	chr15:56381600-56385600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:56381600-56386200	Weak transcription	Brain Angular Gyrus	brain
36	chr15:56381600-56391000	Strong transcription	HMEC	breast
37	chr15:56381600-56397000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:56381800-56386000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:56382000-56385200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:56382000-56385600	Weak transcription	Brain Germinal Matrix	brain
41	chr15:56382200-56385400	Weak transcription	Fetal Intestine Large	intestine
42	chr15:56382200-56387800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr15:56382200-56399200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:56382400-56384800	Weak transcription	Fetal Thymus	thymus
45	chr15:56382400-56385600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr15:56382400-56386600	Weak transcription	Right Ventricle	heart
47	chr15:56382400-56386800	Weak transcription	Small Intestine	intestine
48	chr15:56382600-56385200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:56382600-56385400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:56382600-56385400	Weak transcription	NHDF-Ad	bronchial

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