Variant report

Variant	rs11071517
Chromosome Location	chr15:60617804-60617805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1027899	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12901654	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12903877	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12903959	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17191358	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17270097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35013903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36160486	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67897916	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7169359	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60615600-60618000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr15:60616000-60619200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr15:60616000-60619600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr15:60616200-60619200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr15:60616400-60619000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr15:60616600-60618800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr15:60617000-60618000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:60617000-60619400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:60617200-60619000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:60617400-60618400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:60617800-60618200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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