Variant report

Variant	rs11072380
Chromosome Location	chr15:72974647-72974648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72971779..72975423-chr15:72976170..72980827,7	K562	blood:
2	chr15:72973101..72975344-chr15:72976692..72980792,4	MCF-7	breast:
3	chr15:72973635..72975191-chr15:72978859..72980591,2	K562	blood:
4	chr15:72972671..72974749-chr15:72976443..72978214,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADPGK-2	chr15:72974607-72974763	NONHSAT047117

Variant related genes	Relation type
ENSG00000175202	Chromatin interaction
ENSG00000140463	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11072383	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[ASN][1000 genomes]
rs11072389	0.86[ASN][1000 genomes]
rs11856110	0.98[ASN][1000 genomes]
rs12437473	0.86[ASN][1000 genomes]
rs12439200	0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.86[ASN][1000 genomes]
rs12439473	0.86[ASN][1000 genomes]
rs12591690	0.88[ASN][1000 genomes]
rs12591728	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs12594320	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[ASN][1000 genomes]
rs12898814	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs12902361	0.95[ASN][1000 genomes]
rs12906007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12916236	0.87[ASN][1000 genomes]
rs1346165	0.84[CHB][hapmap];0.96[CHD][hapmap]
rs16957257	0.95[ASN][1000 genomes]
rs16957297	0.85[CHB][hapmap];0.96[CHD][hapmap]
rs2304598	0.93[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs28562097	0.86[ASN][1000 genomes]
rs28648660	0.86[ASN][1000 genomes]
rs28737436	0.86[ASN][1000 genomes]
rs28801790	0.87[ASN][1000 genomes]
rs28827493	0.86[ASN][1000 genomes]
rs34660767	0.87[ASN][1000 genomes]
rs4777541	0.92[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6495018	0.93[CHD][hapmap]
rs7162166	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs7170394	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7172397	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7175918	0.95[ASN][1000 genomes]
rs7182854	0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs8023358	0.93[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs8024644	0.81[ASN][1000 genomes]
rs8026559	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8031691	0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs8036269	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72963800-72977600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:72973200-72977400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:72973600-72977600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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