Variant report

Variant	rs12437473
Chromosome Location	chr15:73060676-73060677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73059200..73060723-chr15:73076549..73078162,2	MCF-7	breast:
2	chr15:73059142..73061965-chr15:73074602..73077936,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260898	Chromatin interaction
ENSG00000159322	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11072380	0.86[ASN][1000 genomes]
rs11072383	0.91[ASN][1000 genomes]
rs11072389	1.00[ASN][1000 genomes]
rs11856110	0.88[ASN][1000 genomes]
rs12439200	1.00[ASN][1000 genomes]
rs12439473	1.00[ASN][1000 genomes]
rs12591690	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12591728	0.84[EUR][1000 genomes]
rs12594320	0.94[ASN][1000 genomes]
rs12898814	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12902361	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12906007	0.89[ASN][1000 genomes]
rs12916236	0.99[ASN][1000 genomes]
rs12916448	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1346165	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16957257	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16957297	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2162268	0.89[EUR][1000 genomes]
rs2304598	0.99[ASN][1000 genomes]
rs28397892	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28562097	0.96[ASN][1000 genomes]
rs28648660	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28737436	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28801790	0.99[ASN][1000 genomes]
rs28827493	1.00[ASN][1000 genomes]
rs28866048	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs33923961	0.81[EUR][1000 genomes]
rs34660767	0.99[ASN][1000 genomes]
rs34940604	0.81[EUR][1000 genomes]
rs4777541	1.00[ASN][1000 genomes]
rs6495017	0.88[ASN][1000 genomes]
rs6495018	0.81[ASN][1000 genomes]
rs7162166	0.84[EUR][1000 genomes]
rs7170394	0.91[ASN][1000 genomes]
rs7172397	0.91[ASN][1000 genomes]
rs7175918	0.91[ASN][1000 genomes]
rs7182854	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8023358	0.94[ASN][1000 genomes]
rs8024644	0.99[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8026286	0.80[AMR][1000 genomes]
rs8026559	0.88[ASN][1000 genomes]
rs8031691	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036269	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73041800-73071000	Strong transcription	Liver	Liver
2	chr15:73043800-73073600	Strong transcription	Fetal Thymus	thymus
3	chr15:73044200-73067600	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr15:73045000-73074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:73045200-73074200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:73045400-73060800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr15:73045400-73066400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:73045600-73067400	Strong transcription	Placenta	Placenta
9	chr15:73046800-73067600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:73048600-73075200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:73049000-73063800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:73051200-73060800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:73051200-73060800	Weak transcription	Right Ventricle	heart
14	chr15:73051200-73062600	Weak transcription	Brain Angular Gyrus	brain
15	chr15:73051200-73062600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:73052800-73062000	Weak transcription	Psoas Muscle	Psoas
17	chr15:73053200-73060800	Weak transcription	Esophagus	oesophagus
18	chr15:73053200-73061600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:73053400-73062000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:73053600-73060800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:73053600-73061000	Weak transcription	Spleen	Spleen
22	chr15:73053600-73062200	Weak transcription	Brain Anterior Caudate	brain
23	chr15:73053600-73062600	Weak transcription	NHLF	lung
24	chr15:73053600-73063600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:73054000-73060800	Weak transcription	Lung	lung
26	chr15:73055000-73060800	Weak transcription	Brain Substantia Nigra	brain
27	chr15:73055000-73062400	Weak transcription	Small Intestine	intestine
28	chr15:73055400-73066600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:73055800-73060800	Weak transcription	Fetal Stomach	stomach
30	chr15:73055800-73061000	Weak transcription	HSMMtube	muscle
31	chr15:73057200-73062400	Weak transcription	HepG2	liver
32	chr15:73057200-73069600	Strong transcription	Hela-S3	cervix
33	chr15:73057800-73067800	Weak transcription	Fetal Heart	heart
34	chr15:73058400-73061400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:73058400-73061400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr15:73058400-73064800	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr15:73058400-73065000	Strong transcription	Osteobl	bone
38	chr15:73058400-73065200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:73058400-73065600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:73058400-73069000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:73058600-73061400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:73058600-73061400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:73058600-73061400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr15:73058600-73061400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:73058600-73061600	ZNF genes & repeats	A549	lung
46	chr15:73058600-73062600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:73058600-73067400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:73058800-73060800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr15:73058800-73060800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:73058800-73060800	ZNF genes & repeats	Primary B cells from cord blood	blood

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