Variant report

Variant	rs33923961
Chromosome Location	chr15:73004739-73004740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12437473	0.81[EUR][1000 genomes]
rs12591690	0.83[EUR][1000 genomes]
rs12591728	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12898814	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12902361	0.86[EUR][1000 genomes]
rs12916448	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1346165	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16957257	0.86[EUR][1000 genomes]
rs16957297	0.91[AMR][1000 genomes]
rs2162268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28397892	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28648660	0.81[EUR][1000 genomes]
rs28737436	0.81[EUR][1000 genomes]
rs28866048	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34940604	0.95[AMR][1000 genomes]
rs7162166	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8026286	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8031691	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72979200-73023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72979200-73023600	Weak transcription	Lung	lung
3	chr15:72979400-73006000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:72979400-73027200	Weak transcription	Aorta	Aorta
5	chr15:72979600-73023200	Weak transcription	Fetal Kidney	kidney
6	chr15:72979600-73026800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:72979800-73007200	Weak transcription	Left Ventricle	heart
8	chr15:72979800-73027400	Weak transcription	Hela-S3	cervix
9	chr15:72980200-73008000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:72981000-73018600	Weak transcription	Pancreas	Pancrea
11	chr15:72985200-73021000	Weak transcription	Fetal Intestine Small	intestine
12	chr15:72993000-73028800	Weak transcription	NHEK	skin
13	chr15:72996600-73005000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:72999000-73009600	Weak transcription	HSMMtube	muscle
15	chr15:72999000-73020400	Weak transcription	NH-A	brain
16	chr15:72999000-73021800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:72999000-73044000	Weak transcription	Small Intestine	intestine
18	chr15:72999600-73027600	Weak transcription	NHLF	lung
19	chr15:72999800-73007600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:73000200-73006800	Weak transcription	Osteobl	bone
21	chr15:73000600-73005600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:73000800-73007600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:73001200-73007400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:73001200-73027600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:73001400-73020400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:73001400-73027600	Weak transcription	Right Ventricle	heart
29	chr15:73001600-73007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:73001600-73008600	Weak transcription	Placenta	Placenta
31	chr15:73001600-73018600	Weak transcription	HepG2	liver
32	chr15:73001800-73027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:73001800-73027400	Weak transcription	K562	blood
34	chr15:73001800-73033200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr15:73002000-73006200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:73002000-73006200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:73002000-73007600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:73002000-73054600	Weak transcription	Fetal Brain Male	brain
39	chr15:73002200-73005800	Strong transcription	Fetal Stomach	stomach
40	chr15:73002200-73007600	Weak transcription	Thymus	Thymus
41	chr15:73002200-73023000	Weak transcription	Fetal Thymus	thymus
42	chr15:73002200-73026000	Weak transcription	Fetal Heart	heart
43	chr15:73002200-73028800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr15:73002400-73005000	Strong transcription	Fetal Brain Female	brain
45	chr15:73002400-73010600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:73002400-73022800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:73002400-73028800	Weak transcription	Psoas Muscle	Psoas
48	chr15:73002800-73007400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr15:73003000-73005400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr15:73003000-73006600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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