Variant report

Variant	rs28866048
Chromosome Location	chr15:73082404-73082405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73070867..73073438-chr15:73080121..73082937,2	K562	blood:
2	chr15:73080133..73082607-chr15:73083509..73085215,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11072389	0.88[ASN][1000 genomes]
rs12437473	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12439200	0.88[ASN][1000 genomes]
rs12439473	0.88[ASN][1000 genomes]
rs12591690	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12591728	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12594320	0.83[ASN][1000 genomes]
rs12898814	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12902361	0.84[EUR][1000 genomes]
rs12916236	0.87[ASN][1000 genomes]
rs12916448	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1346165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957257	0.84[EUR][1000 genomes]
rs16957297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162268	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2304598	0.87[ASN][1000 genomes]
rs28397892	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28562097	0.85[ASN][1000 genomes]
rs28648660	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28737436	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28801790	0.87[ASN][1000 genomes]
rs28827493	0.88[ASN][1000 genomes]
rs33923961	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34660767	0.87[ASN][1000 genomes]
rs34940604	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4777541	0.88[ASN][1000 genomes]
rs6495017	1.00[ASN][1000 genomes]
rs7162166	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7182854	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8023358	0.82[ASN][1000 genomes]
rs8024644	0.82[ASN][1000 genomes]
rs8026286	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8031691	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8036269	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73077000-73088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73079600-73082600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:73080000-73082600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:73080000-73088800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:73081200-73088800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:73082000-73083600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:73082000-73083600	Enhancers	NHDF-Ad	bronchial
8	chr15:73082200-73083400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:73082200-73083400	Enhancers	Osteobl	bone
10	chr15:73082200-73083600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:73082200-73088800	Weak transcription	Ovary	ovary
12	chr15:73082400-73083200	Enhancers	HSMM	muscle
13	chr15:73082400-73083400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:73082400-73083400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:73082400-73083400	Enhancers	NH-A	brain

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