Variant report

Variant	rs6495017
Chromosome Location	chr15:73089625-73089626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:73087611..73089762-chr15:73093247..73096231,2	MCF-7	breast:
2	chr15:73074665..73076706-chr15:73087969..73090842,2	MCF-7	breast:
3	chr15:73088905..73089789-chr15:73373192..73374367,4	MCF-7	breast:
4	chr15:73075478..73077240-chr15:73088891..73091683,3	MCF-7	breast:
5	chr15:73089006..73089640-chr15:73565597..73566353,2	MCF-7	breast:
6	chr15:73088223..73090036-chr15:73095674..73097846,2	K562	blood:
7	chr15:73076344..73077195-chr15:73088645..73089718,6	MCF-7	breast:
8	chr15:73088939..73089992-chr15:73373425..73374263,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11072389	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12437473	0.88[ASN][1000 genomes]
rs12438864	0.91[EUR][1000 genomes]
rs12439200	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12439473	0.88[ASN][1000 genomes]
rs12591690	0.86[ASN][1000 genomes]
rs12591728	0.87[ASN][1000 genomes]
rs12594320	0.83[ASN][1000 genomes]
rs12898814	0.82[ASN][1000 genomes]
rs12916236	0.87[ASN][1000 genomes]
rs12916448	0.99[ASN][1000 genomes]
rs1346165	0.98[ASN][1000 genomes]
rs16957297	1.00[ASN][1000 genomes]
rs2304598	0.87[ASN][1000 genomes]
rs28562097	0.85[ASN][1000 genomes]
rs28648660	0.88[ASN][1000 genomes]
rs28737436	0.88[ASN][1000 genomes]
rs28801790	0.87[ASN][1000 genomes]
rs28827493	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28866048	1.00[ASN][1000 genomes]
rs34660767	0.87[ASN][1000 genomes]
rs4777541	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7162166	0.88[ASN][1000 genomes]
rs7182854	0.86[ASN][1000 genomes]
rs8023358	0.82[ASN][1000 genomes]
rs8024644	0.82[ASN][1000 genomes]
rs8031691	0.88[ASN][1000 genomes]
rs8036269	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73088400-73090000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:73088600-73090000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr15:73088800-73089800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:73088800-73089800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:73088800-73089800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr15:73088800-73089800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
7	chr15:73088800-73089800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
8	chr15:73088800-73089800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:73088800-73089800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:73088800-73089800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:73088800-73089800	Flanking Active TSS	Liver	Liver
12	chr15:73088800-73089800	Active TSS	Colon Smooth Muscle	Colon
13	chr15:73088800-73089800	Bivalent Enhancer	Fetal Brain Male	brain
14	chr15:73088800-73089800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr15:73088800-73089800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr15:73088800-73089800	Flanking Active TSS	HMEC	breast
17	chr15:73088800-73089800	Active TSS	HSMM	muscle
18	chr15:73088800-73089800	Active TSS	NHLF	lung
19	chr15:73088800-73090000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:73088800-73090000	Active TSS	H9 Cell Line	embryonic stem cell
21	chr15:73088800-73090000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr15:73088800-73090000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:73088800-73090000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:73088800-73090000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:73088800-73090000	Active TSS	Brain Angular Gyrus	brain
26	chr15:73088800-73090000	Flanking Active TSS	Ovary	ovary
27	chr15:73088800-73090000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr15:73088800-73090000	Flanking Active TSS	GM12878-XiMat	blood
29	chr15:73088800-73090400	Active TSS	Brain Anterior Caudate	brain
30	chr15:73089000-73089800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:73089000-73089800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:73089000-73089800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:73089000-73089800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr15:73089000-73089800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:73089000-73089800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:73089000-73089800	Active TSS	Fetal Brain Female	brain
37	chr15:73089000-73089800	Flanking Active TSS	Spleen	Spleen
38	chr15:73089000-73089800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
39	chr15:73089000-73090000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr15:73089000-73090000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:73089000-73090000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:73089000-73090000	Bivalent/Poised TSS	NHEK	skin
43	chr15:73089200-73089800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr15:73089200-73089800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
45	chr15:73089200-73089800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
46	chr15:73089200-73089800	Active TSS	Aorta	Aorta
47	chr15:73089200-73089800	Bivalent/Poised TSS	HepG2	liver
48	chr15:73089200-73089800	Active TSS	HSMMtube	muscle
49	chr15:73089200-73089800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
50	chr15:73089200-73090000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell

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