Variant report

Variant	rs12591728
Chromosome Location	chr15:72973268-72973269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72971779..72975423-chr15:72976170..72980827,7	K562	blood:
2	chr15:72972081..72974113-chr15:72978264..72980003,3	MCF-7	breast:
3	chr15:72973101..72975344-chr15:72976692..72980792,4	MCF-7	breast:
4	chr15:72972671..72974749-chr15:72976443..72978214,2	K562	blood:

Variant related genes	Relation type
ENSG00000175202	Chromatin interaction
ENSG00000140463	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11072380	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs11072383	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs11856110	0.88[ASN][1000 genomes]
rs12437473	0.84[EUR][1000 genomes]
rs12591690	0.86[EUR][1000 genomes]
rs12898814	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12902361	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906007	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs12916448	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1346165	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16957257	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16957297	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2162268	0.91[AMR][1000 genomes]
rs2304598	0.80[CHB][hapmap]
rs28397892	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28648660	0.84[EUR][1000 genomes]
rs28737436	0.84[EUR][1000 genomes]
rs28866048	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs33923961	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34940604	0.86[AMR][1000 genomes]
rs6495017	0.87[ASN][1000 genomes]
rs7162166	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170394	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs7172397	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs7175918	0.85[ASN][1000 genomes]
rs7182854	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8026286	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8026559	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs8031691	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72963800-72977600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:72973000-72973600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:72973200-72977400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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