Variant report

Variant	rs6495018
Chromosome Location	chr15:73097018-73097019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73075592..73077961-chr15:73095620..73098045,2	MCF-7	breast:
2	chr15:73095643..73098434-chr15:73099404..73102029,2	K562	blood:
3	chr15:73088223..73090036-chr15:73095674..73097846,2	K562	blood:
4	chr15:73074471..73077912-chr15:73094314..73098768,4	MCF-7	breast:
5	chr15:73090912..73092510-chr15:73095226..73098076,2	K562	blood:
6	chr15:73095998..73099016-chr15:73347374..73350745,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260898	Chromatin interaction
ENSG00000159322	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11072380	0.93[CHD][hapmap]
rs11072383	0.93[CHD][hapmap]
rs11072389	0.81[ASN][1000 genomes]
rs12437473	0.81[ASN][1000 genomes]
rs12438864	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12439200	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs12439473	0.81[ASN][1000 genomes]
rs12594320	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs12916236	0.80[ASN][1000 genomes]
rs1346165	0.89[CHD][hapmap]
rs16957297	0.89[CHD][hapmap]
rs2010133	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2304598	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs28648660	0.81[ASN][1000 genomes]
rs28737436	0.81[ASN][1000 genomes]
rs28801790	0.80[ASN][1000 genomes]
rs28827493	0.81[ASN][1000 genomes]
rs34660767	0.80[ASN][1000 genomes]
rs3862414	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3985562	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777541	0.85[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4777547	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495019	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7170394	0.81[JPT][hapmap]
rs7172397	0.81[JPT][hapmap]
rs7182854	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs8023358	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8024644	0.86[ASN][1000 genomes]
rs8026559	0.93[CHD][hapmap];0.83[TSI][hapmap]
rs8031691	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs8036269	0.81[ASN][1000 genomes]
rs8042566	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73096600-73097200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:73097000-73097200	Flanking Bivalent TSS/Enh	HepG2	liver
3	chr15:73097000-73097200	Bivalent/Poised TSS	K562	blood
4	chr15:73097000-73097400	Active TSS	Pancreatic Islets	Pancreatic Islet

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