Variant report

Variant	rs2010133
Chromosome Location	chr15:73101585-73101586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73095643..73098434-chr15:73099404..73102029,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11072380	0.89[CHD][hapmap]
rs11072383	0.89[CHD][hapmap]
rs12438864	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12439200	0.86[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]
rs12594320	0.86[CHB][hapmap];0.89[CHD][hapmap]
rs1346165	0.85[CHD][hapmap]
rs16957297	0.85[CHD][hapmap]
rs2304598	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs3862414	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3985562	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777541	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4777547	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495018	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495019	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170394	0.81[JPT][hapmap]
rs7172397	0.81[JPT][hapmap]
rs7182854	0.86[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs8023358	0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs8026559	0.89[CHD][hapmap];0.83[TSI][hapmap]
rs8031691	0.86[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs8042566	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv984209	chr15:73098293-73108437	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73098600-73112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73100600-73103000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:73100800-73103000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr15:73101000-73102200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:73101000-73102400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:73101200-73101800	Enhancers	Primary B cells from peripheral blood	blood
7	chr15:73101200-73102200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:73101200-73102400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:73101400-73102000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr15:73101400-73102400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:73101400-73102400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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