Variant report
Variant | rs11072662 |
---|---|
Chromosome Location | chr15:77999436-77999437 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:77996121..77999450-chr15:78013163..78015366,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11072663 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11072665 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11072666 | 0.82[EUR][1000 genomes] |
rs11629729 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11631410 | 0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11633354 | 0.86[EUR][1000 genomes] |
rs11637588 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11856761 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12903563 | 0.85[EUR][1000 genomes] |
rs12911718 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12915704 | 0.83[EUR][1000 genomes] |
rs28406214 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34906247 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs35028279 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs35761651 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs36058724 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4073356 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4076998 | 0.90[EUR][1000 genomes] |
rs4243048 | 0.80[EUR][1000 genomes] |
rs4334265 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4360891 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4477663 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4578613 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4595768 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4886521 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4886898 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4886899 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4886900 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4886902 | 1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs56370262 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6495245 | 0.95[EUR][1000 genomes] |
rs7175083 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7176668 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs8027520 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8027667 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs8043490 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040852 | chr15:77160237-78137541 | Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
2 | nsv916323 | chr15:77485765-78121259 | Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
3 | nsv833060 | chr15:77816654-78035204 | Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
4 | esv1806097 | chr15:77817889-78301377 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
5 | nsv529491 | chr15:77932659-78751516 | Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
6 | nsv570141 | chr15:77985554-78017361 | Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv570142 | chr15:77993282-78010746 | Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
8 | nsv570143 | chr15:77993282-78017361 | Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
9 | nsv833061 | chr15:77998374-78121905 | Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
10 | nsv570144 | chr15:77999436-78010949 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
11 | nsv570145 | chr15:77999436-78012025 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:77969200-78007600 | Weak transcription | Right Atrium | heart |
2 | chr15:77992200-78002200 | Weak transcription | Fetal Brain Male | brain |
3 | chr15:77994800-78002000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr15:77995400-78004200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
5 | chr15:77998800-77999800 | Enhancers | Brain Angular Gyrus | brain |
6 | chr15:77999200-78000200 | Enhancers | Brain Dorsolateral Prefrontal Cortex | brain |
7 | chr15:77999400-78003600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |