Variant report

Variant	rs11633354
Chromosome Location	chr15:78032357-78032358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78029860..78033858-chr15:78038839..78041859,3	K562	blood:
2	chr15:78025745..78027955-chr15:78030465..78032674,2	K562	blood:
3	chr15:78028786..78030322-chr15:78031928..78034690,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1104991	0.90[ASN][1000 genomes]
rs11072662	0.86[EUR][1000 genomes]
rs11072663	0.83[EUR][1000 genomes]
rs11072665	0.85[EUR][1000 genomes]
rs11072669	0.90[ASN][1000 genomes]
rs11072671	0.90[ASN][1000 genomes]
rs1109886	0.90[ASN][1000 genomes]
rs11629729	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11631410	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11637588	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11856761	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12903563	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908030	0.89[ASN][1000 genomes]
rs12911718	0.87[EUR][1000 genomes]
rs28406214	0.86[EUR][1000 genomes]
rs28537849	0.90[ASN][1000 genomes]
rs28544297	0.83[ASN][1000 genomes]
rs34906247	0.87[EUR][1000 genomes]
rs35028279	0.86[EUR][1000 genomes]
rs35761651	0.86[EUR][1000 genomes]
rs36058724	0.87[EUR][1000 genomes]
rs4073356	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4076998	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4334265	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4360891	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4477663	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4578613	0.86[EUR][1000 genomes]
rs4595768	0.86[EUR][1000 genomes]
rs4886521	0.86[EUR][1000 genomes]
rs4886898	0.87[EUR][1000 genomes]
rs4886899	0.82[EUR][1000 genomes]
rs4886902	0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56370262	0.86[EUR][1000 genomes]
rs6495245	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7175083	0.86[EUR][1000 genomes]
rs7176668	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027520	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8027667	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8028520	0.90[ASN][1000 genomes]
rs8035384	0.90[ASN][1000 genomes]
rs8038666	0.90[ASN][1000 genomes]
rs9672486	0.85[ASN][1000 genomes]
rs9672504	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv570150	chr15:78004743-78038124	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv904420	chr15:78025267-78078903	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78029800-78032800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:78030200-78033800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:78030400-78032800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:78030600-78033400	Enhancers	K562	blood
5	chr15:78031000-78032400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:78031000-78032600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:78031000-78032600	Enhancers	Brain Germinal Matrix	brain
8	chr15:78031200-78032400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr15:78031200-78032400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr15:78031200-78032600	Enhancers	Fetal Brain Female	brain
11	chr15:78031400-78032400	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr15:78031400-78032400	Weak transcription	Spleen	Spleen
13	chr15:78031400-78033000	Enhancers	Fetal Brain Male	brain
14	chr15:78031600-78033200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:78031800-78032600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
16	chr15:78031800-78033400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr15:78032000-78033000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:78032000-78033200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr15:78032000-78033200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr15:78032000-78033400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:78032000-78033600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:78032000-78037200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:78032200-78032400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr15:78032200-78032400	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr15:78032200-78032400	Bivalent Enhancer	Brain Hippocampus Middle	brain
26	chr15:78032200-78032600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:78032200-78032600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
28	chr15:78032200-78033000	Enhancers	H9 Cell Line	embryonic stem cell

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