Variant report

Variant	rs8027520
Chromosome Location	chr15:78012708-78012709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78006781..78008736-chr15:78010587..78012816,2	K562	blood:
2	chr15:73923669..73926089-chr15:78010481..78013463,2	K562	blood:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11072662	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11072663	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11072665	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11072666	0.87[EUR][1000 genomes]
rs11629729	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11631410	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11633354	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11637588	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11856761	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12903563	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12911718	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12915704	0.85[EUR][1000 genomes]
rs28406214	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34906247	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35028279	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35761651	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36058724	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4073356	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4076998	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4243048	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4334265	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4360891	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4477663	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4578613	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4595768	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4886521	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4886898	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4886899	0.89[EUR][1000 genomes]
rs4886900	0.86[EUR][1000 genomes]
rs4886902	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56370262	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6495245	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7175083	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7176668	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8027667	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8043490	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv570141	chr15:77985554-78017361	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570143	chr15:77993282-78017361	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv570150	chr15:78004743-78038124	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3311440	chr15:78008123-78012813	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	esv7445	chr15:78008269-78012797	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	nsv570159	chr15:78008843-78022087	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3338774	chr15:78009997-78014295	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78006400-78013000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:78007000-78016600	Weak transcription	Brain Angular Gyrus	brain
3	chr15:78009400-78015200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:78010000-78015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78010000-78015800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:78012000-78015800	Weak transcription	Fetal Heart	heart
7	chr15:78012200-78013000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
8	chr15:78012200-78013000	Enhancers	Fetal Brain Female	brain
9	chr15:78012200-78013400	Enhancers	Brain Germinal Matrix	brain
10	chr15:78012400-78012800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:78012400-78013400	Enhancers	Fetal Brain Male	brain
12	chr15:78012400-78016000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:78012600-78013200	Weak transcription	Spleen	Spleen
14	chr15:78012600-78013600	Enhancers	Fetal Muscle Trunk	muscle
15	chr15:78012600-78013600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links