Variant report

Variant	rs7176668
Chromosome Location	chr15:78030023-78030024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78028786..78030322-chr15:78031928..78034690,2	MCF-7	breast:
2	chr15:78021356..78025369-chr15:78027266..78032240,6	K562	blood:
3	chr15:78022100..78024937-chr15:78029389..78030939,2	MCF-7	breast:
4	chr15:78029860..78033858-chr15:78038839..78041859,3	K562	blood:
5	chr15:78025937..78028390-chr15:78028577..78030082,2	K562	blood:
6	chr15:78029999..78032267-chr15:78076792..78079270,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1104991	0.87[ASN][1000 genomes]
rs11072662	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11072663	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11072665	0.92[EUR][1000 genomes]
rs11072666	0.80[EUR][1000 genomes]
rs11072669	0.87[ASN][1000 genomes]
rs11072671	0.87[ASN][1000 genomes]
rs1109886	0.87[ASN][1000 genomes]
rs11629729	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11631410	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11633354	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637588	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11856761	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12903563	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12908030	0.86[ASN][1000 genomes]
rs12911718	0.92[EUR][1000 genomes]
rs12915704	0.82[EUR][1000 genomes]
rs28406214	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28537849	0.87[ASN][1000 genomes]
rs34906247	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35028279	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35761651	0.93[EUR][1000 genomes]
rs36058724	0.93[EUR][1000 genomes]
rs4073356	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4076998	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4334265	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4360891	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4477663	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4578613	0.93[EUR][1000 genomes]
rs4595768	0.93[EUR][1000 genomes]
rs4886521	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4886898	0.93[CEU][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4886899	0.87[EUR][1000 genomes]
rs4886900	0.85[EUR][1000 genomes]
rs4886902	0.93[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56370262	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6495245	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7175083	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8027520	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8027667	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8028520	0.87[ASN][1000 genomes]
rs8035384	0.87[ASN][1000 genomes]
rs8038666	0.87[ASN][1000 genomes]
rs8043490	0.81[EUR][1000 genomes]
rs9672486	0.82[ASN][1000 genomes]
rs9672504	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv570150	chr15:78004743-78038124	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv904420	chr15:78025267-78078903	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78013000-78031200	Weak transcription	Fetal Brain Female	brain
2	chr15:78014000-78031000	Weak transcription	Spleen	Spleen
3	chr15:78020800-78030200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:78029400-78030600	Flanking Active TSS	K562	blood
5	chr15:78029600-78030400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:78029800-78031000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:78029800-78031200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr15:78029800-78031400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:78029800-78031600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:78029800-78032800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:78030000-78030200	Enhancers	Colon Smooth Muscle	Colon
12	chr15:78030000-78030800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr15:78030000-78031200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr15:78030000-78031200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr15:78030000-78031200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr15:78030000-78031600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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