Variant report

Variant	rs11075772
Chromosome Location	chr16:70623713-70623714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:70618565..70621131-chr16:70622633..70625023,2	MCF-7	breast:
2	chr16:70608216..70610956-chr16:70621999..70624139,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260023	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11075767	0.82[EUR][1000 genomes]
rs11075768	0.82[EUR][1000 genomes]
rs11075770	0.82[EUR][1000 genomes]
rs11640374	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11643373	0.87[EUR][1000 genomes]
rs11643823	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11645092	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11645214	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11645287	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11645437	0.82[EUR][1000 genomes]
rs11648402	0.82[EUR][1000 genomes]
rs11866400	0.80[EUR][1000 genomes]
rs12597401	0.82[EUR][1000 genomes]
rs12931402	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2168606	0.83[EUR][1000 genomes]
rs33910368	0.81[EUR][1000 genomes]
rs34567847	0.82[EUR][1000 genomes]
rs4284632	0.82[EUR][1000 genomes]
rs4436771	0.82[EUR][1000 genomes]
rs4513092	0.82[EUR][1000 genomes]
rs4592653	0.83[EUR][1000 genomes]
rs6499320	0.81[EUR][1000 genomes]
rs6499321	0.81[EUR][1000 genomes]
rs6499323	0.84[ASN][1000 genomes]
rs7195030	0.84[EUR][1000 genomes]
rs7197262	0.82[EUR][1000 genomes]
rs7197840	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7198317	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7201750	0.82[EUR][1000 genomes]
rs8047409	0.91[EUR][1000 genomes]
rs8049221	0.88[EUR][1000 genomes]
rs8049277	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8062178	0.82[EUR][1000 genomes]
rs9635522	0.82[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11075772	COG4	cis	Whole Blood	GTEx
rs11075772	RP11-296I10.6	cis	Artery Tibial	GTEx
rs11075772	RP11-296I10.6	cis	Muscle Skeletal	GTEx
rs11075772	LOC440348	Cis_chr	lymphoblastoid	RTeQTL
rs11075772	RP11-419C5.2	cis	Skin Sun Exposed Lower leg	GTEx
rs11075772	RP11-296I10.6	cis	Thyroid	GTEx

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70608000-70624600	Weak transcription	Pancreas	Pancrea
2	chr16:70609000-70628000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:70609800-70623800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:70610000-70623800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:70614000-70624200	Weak transcription	Gastric	stomach
6	chr16:70614200-70623800	Weak transcription	Stomach Mucosa	stomach
7	chr16:70614200-70624000	Weak transcription	Aorta	Aorta
8	chr16:70614400-70623800	Weak transcription	Adipose Nuclei	Adipose
9	chr16:70614400-70623800	Weak transcription	Colonic Mucosa	Colon
10	chr16:70616200-70623800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr16:70616400-70624200	Weak transcription	Right Atrium	heart
12	chr16:70616800-70624000	Weak transcription	Ovary	ovary
13	chr16:70618400-70623800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr16:70618400-70623800	Weak transcription	NHDF-Ad	bronchial
15	chr16:70619000-70624400	Weak transcription	Fetal Thymus	thymus
16	chr16:70619400-70623800	Weak transcription	Fetal Muscle Leg	muscle
17	chr16:70620800-70624000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr16:70621000-70623800	Weak transcription	Esophagus	oesophagus
19	chr16:70621000-70624400	Weak transcription	Spleen	Spleen
20	chr16:70621600-70624000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr16:70622000-70626400	Enhancers	Fetal Stomach	stomach
22	chr16:70622400-70623800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:70622400-70623800	Enhancers	Osteobl	bone
24	chr16:70622400-70624000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:70622400-70624200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr16:70622400-70625000	Enhancers	HMEC	breast
27	chr16:70622600-70623800	Weak transcription	HSMMtube	muscle
28	chr16:70622600-70624000	Enhancers	Fetal Intestine Large	intestine
29	chr16:70622800-70623800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr16:70622800-70623800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr16:70622800-70623800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr16:70622800-70624000	Weak transcription	Brain Hippocampus Middle	brain
33	chr16:70622800-70624000	Enhancers	Stomach Smooth Muscle	stomach
34	chr16:70622800-70624000	Weak transcription	NH-A	brain
35	chr16:70622800-70624200	Weak transcription	Liver	Liver
36	chr16:70622800-70624200	Weak transcription	Colon Smooth Muscle	Colon
37	chr16:70622800-70624600	Enhancers	Rectal Smooth Muscle	rectum
38	chr16:70623000-70623800	Enhancers	NHEK	skin
39	chr16:70623000-70624000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr16:70623200-70623800	Enhancers	Fetal Intestine Small	intestine
41	chr16:70623600-70623800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr16:70623600-70623800	Enhancers	A549	lung
43	chr16:70623600-70624000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr16:70623600-70624200	Enhancers	Fetal Muscle Trunk	muscle

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