Variant report

Variant	rs8049221
Chromosome Location	chr16:70636704-70636705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1006985	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11075772	0.88[EUR][1000 genomes]
rs11640374	0.81[EUR][1000 genomes]
rs11643373	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11643823	0.81[EUR][1000 genomes]
rs11645092	0.81[EUR][1000 genomes]
rs11645287	0.81[EUR][1000 genomes]
rs11648402	0.85[AMR][1000 genomes]
rs12931402	0.84[EUR][1000 genomes]
rs2168606	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57014028	0.81[AFR][1000 genomes]
rs6499320	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6499321	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs71401814	0.85[AMR][1000 genomes]
rs7195030	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7201750	0.85[AMR][1000 genomes]
rs8047409	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8049277	0.95[EUR][1000 genomes]
rs8062178	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs8049221	LOC440348	Cis_chr	lymphoblastoid	RTeQTL
rs8049221	IL34	cis	Nerve Tibial	GTEx
rs8049221	RP11-296I10.6	cis	Artery Tibial	GTEx
rs8049221	RP11-296I10.6	cis	Skin Sun Exposed Lower leg	GTEx
rs8049221	CLEC18A	cis	Artery Aorta	GTEx
rs8049221	RP11-419C5.2	cis	Skin Sun Exposed Lower leg	GTEx
rs8049221	RP11-419C5.2	cis	Muscle Skeletal	GTEx
rs8049221	PDXDC2P	cis	Skin Sun Exposed Lower leg	GTEx
rs8049221	RP11-296I10.6	cis	lung	GTEx
rs8049221	RP11-296I10.6	cis	Thyroid	GTEx
rs8049221	RP11-296I10.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70626200-70644200	Weak transcription	Right Atrium	heart
2	chr16:70626400-70639000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr16:70626400-70642200	Weak transcription	Esophagus	oesophagus
4	chr16:70626400-70644200	Weak transcription	Lung	lung
5	chr16:70626400-70644200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr16:70629600-70644000	Weak transcription	Fetal Muscle Leg	muscle
7	chr16:70632200-70638600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr16:70633200-70640600	Weak transcription	Fetal Stomach	stomach
9	chr16:70635400-70638000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:70635800-70638000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr16:70636000-70640600	Strong transcription	Fetal Intestine Small	intestine
12	chr16:70636200-70637400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr16:70636200-70638200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr16:70636200-70638400	Weak transcription	Spleen	Spleen
15	chr16:70636200-70638800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr16:70636400-70637400	Weak transcription	Fetal Intestine Large	intestine
17	chr16:70636400-70644200	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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