Variant report

Variant	rs8049277
Chromosome Location	chr16:70630077-70630078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1006985	0.83[EUR][1000 genomes]
rs11075772	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11640374	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11643373	0.84[EUR][1000 genomes]
rs11643823	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11645092	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11645287	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12931402	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2168606	0.80[EUR][1000 genomes]
rs4592653	0.81[EUR][1000 genomes]
rs7195030	0.81[EUR][1000 genomes]
rs7197840	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7198317	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8047409	0.98[EUR][1000 genomes]
rs8049221	0.95[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs8049277	RP11-296I10.6	cis	Artery Tibial	GTEx
rs8049277	COG4	cis	Whole Blood	GTEx
rs8049277	RP11-296I10.6	cis	Skin Sun Exposed Lower leg	GTEx
rs8049277	IL34	cis	Nerve Tibial	GTEx
rs8049277	RP11-296I10.6	cis	Thyroid	GTEx
rs8049277	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70625600-70630800	Weak transcription	Aorta	Aorta
2	chr16:70625800-70635200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:70626200-70644200	Weak transcription	Right Atrium	heart
4	chr16:70626400-70630800	Weak transcription	Fetal Stomach	stomach
5	chr16:70626400-70635800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr16:70626400-70639000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr16:70626400-70642200	Weak transcription	Esophagus	oesophagus
8	chr16:70626400-70644200	Weak transcription	Lung	lung
9	chr16:70626400-70644200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr16:70627000-70630400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr16:70628400-70632200	Enhancers	Spleen	Spleen
12	chr16:70628600-70632200	Strong transcription	Fetal Intestine Small	intestine
13	chr16:70628800-70632200	Weak transcription	Fetal Intestine Large	intestine
14	chr16:70629600-70630200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr16:70629600-70644000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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