Variant report

Variant	rs8047409
Chromosome Location	chr16:70628043-70628044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1006985	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11075768	0.82[AMR][1000 genomes]
rs11075770	0.82[AMR][1000 genomes]
rs11075772	0.91[EUR][1000 genomes]
rs11640374	0.84[EUR][1000 genomes]
rs11643373	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11643823	0.84[EUR][1000 genomes]
rs11645092	0.84[EUR][1000 genomes]
rs11645287	0.84[EUR][1000 genomes]
rs11648402	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12597401	0.80[EUR][1000 genomes]
rs12909	0.82[AMR][1000 genomes]
rs12931402	0.86[EUR][1000 genomes]
rs2168606	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2303793	0.81[AMR][1000 genomes]
rs4284632	0.82[AMR][1000 genomes]
rs4592653	0.80[EUR][1000 genomes]
rs57014028	0.81[AFR][1000 genomes]
rs6499320	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6499321	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs71401814	0.90[AMR][1000 genomes]
rs7195030	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7198317	0.82[EUR][1000 genomes]
rs7201750	0.90[AMR][1000 genomes]
rs7204583	0.80[AMR][1000 genomes]
rs8049221	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8049277	0.98[EUR][1000 genomes]
rs8062178	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8063990	0.81[AMR][1000 genomes]
rs9635522	0.82[AMR][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs8047409	RP11-296I10.6	cis	Thyroid	GTEx
rs8047409	RP11-419C5.2	cis	Muscle Skeletal	GTEx
rs8047409	IL34	cis	Nerve Tibial	GTEx
rs8047409	PDXDC2P	cis	Skin Sun Exposed Lower leg	GTEx
rs8047409	RP11-296I10.6	cis	Artery Tibial	GTEx
rs8047409	LOC440348	Cis_chr	lymphoblastoid	RTeQTL
rs8047409	CLEC18A	cis	Artery Aorta	GTEx
rs8047409	RP11-296I10.6	cis	Muscle Skeletal	GTEx
rs8047409	RP11-419C5.2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70624800-70628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:70625200-70628600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr16:70625200-70628800	Enhancers	Fetal Intestine Large	intestine
4	chr16:70625400-70628200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr16:70625600-70630800	Weak transcription	Aorta	Aorta
6	chr16:70625800-70635200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:70626200-70628400	Weak transcription	Spleen	Spleen
8	chr16:70626200-70628600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr16:70626200-70644200	Weak transcription	Right Atrium	heart
10	chr16:70626400-70628400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr16:70626400-70628600	Weak transcription	Adipose Nuclei	Adipose
12	chr16:70626400-70628600	Weak transcription	Osteobl	bone
13	chr16:70626400-70630800	Weak transcription	Fetal Stomach	stomach
14	chr16:70626400-70635800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr16:70626400-70639000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr16:70626400-70642200	Weak transcription	Esophagus	oesophagus
17	chr16:70626400-70644200	Weak transcription	Lung	lung
18	chr16:70626400-70644200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr16:70626600-70628400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr16:70627000-70630400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr16:70627800-70628600	Weak transcription	Fetal Intestine Small	intestine
22	chr16:70628000-70629400	Weak transcription	Fetal Muscle Leg	muscle

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