Variant report

Variant	rs1006985
Chromosome Location	chr16:70636995-70636996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11075767	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs11075770	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs11640374	0.88[CEU][hapmap]
rs11641683	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs11643373	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs11645214	0.88[CEU][hapmap]
rs11645287	0.88[CEU][hapmap]
rs11645437	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs11645585	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs11648402	0.94[ASW][hapmap];0.92[CEU][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.93[YRI][hapmap]
rs11866400	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs12447090	0.81[JPT][hapmap]
rs12597401	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs12925729	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs2168606	0.88[ASW][hapmap];0.92[CEU][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.90[YRI][hapmap]
rs2288491	0.96[CEU][hapmap];0.90[JPT][hapmap]
rs2303791	0.83[MEX][hapmap]
rs2303792	0.90[JPT][hapmap]
rs2303793	0.92[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs3762171	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs3852695	0.88[YRI][hapmap]
rs4284632	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4436771	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4513092	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4592653	0.88[CEU][hapmap]
rs4985533	0.83[MEX][hapmap]
rs4985534	0.83[MEX][hapmap]
rs6499320	0.92[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs6499327	0.82[YRI][hapmap]
rs7190039	0.83[MEX][hapmap]
rs7198317	0.88[CEU][hapmap]
rs7200430	0.92[CEU][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs7201750	0.89[ASW][hapmap];0.92[CEU][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap]
rs7204583	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs722579	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs7919	0.86[JPT][hapmap]
rs8047409	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8049221	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8049277	0.83[EUR][1000 genomes]
rs8049641	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs8051506	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs8052125	0.92[CEU][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap]
rs8053436	0.90[JPT][hapmap]
rs8057610	0.92[CEU][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs8057766	0.90[YRI][hapmap]
rs8062178	0.92[CEU][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap]
rs8062183	0.90[JPT][hapmap]
rs8063990	0.92[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs8064013	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs936994	0.90[JPT][hapmap]
rs9921696	0.90[YRI][hapmap]
rs9925510	0.93[YRI][hapmap]
rs9934440	0.90[JPT][hapmap]
rs9936225	0.92[CEU][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs1006985	EXOSC6	cis	cerebellum	SCAN
rs1006985	FTSJD1	cis	parietal	SCAN
rs1006985	EXOSC6	cis	parietal	SCAN
rs1006985	RP11-296I10.6	cis	Thyroid	GTEx
rs1006985	WWP2	cis	cerebellum	SCAN
rs1006985	RP11-296I10.6	cis	Artery Tibial	GTEx
rs1006985	C16orf86	cis	cerebellum	SCAN
rs1006985	LOC283970	cis	multi-tissue	Pritchard
rs1006985	WWP2	cis	parietal	SCAN
rs1006985	PDXDC2P	cis	Skin Sun Exposed Lower leg	GTEx
rs1006985	TMCO7	cis	parietal	SCAN
rs1006985	SF3B3	cis	parietal	SCAN
rs1006985	PDPR	cis	parietal	SCAN
rs1006985	CLEC18A	cis	Artery Aorta	GTEx
rs1006985	LOC440348	Cis_chr	lymphoblastoid	RTeQTL
rs1006985	IL34	cis	parietal	SCAN
rs1006985	PDPR	cis	cerebellum	SCAN
rs1006985	IL34	cis	Nerve Tibial	GTEx
rs1006985	SF3B3	cis	cerebellum	SCAN
rs1006985	RP11-419C5.2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70626200-70644200	Weak transcription	Right Atrium	heart
2	chr16:70626400-70639000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr16:70626400-70642200	Weak transcription	Esophagus	oesophagus
4	chr16:70626400-70644200	Weak transcription	Lung	lung
5	chr16:70626400-70644200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr16:70629600-70644000	Weak transcription	Fetal Muscle Leg	muscle
7	chr16:70632200-70638600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr16:70633200-70640600	Weak transcription	Fetal Stomach	stomach
9	chr16:70635400-70638000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:70635800-70638000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr16:70636000-70640600	Strong transcription	Fetal Intestine Small	intestine
12	chr16:70636200-70637400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr16:70636200-70638200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr16:70636200-70638400	Weak transcription	Spleen	Spleen
15	chr16:70636200-70638800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr16:70636400-70637400	Weak transcription	Fetal Intestine Large	intestine
17	chr16:70636400-70644200	Weak transcription	Duodenum Mucosa	Duodenum

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