Variant report

Variant	rs11082654
Chromosome Location	chr18:45656806-45656807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11082650	0.83[EUR][1000 genomes]
rs11082651	0.83[EUR][1000 genomes]
rs11082652	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11082658	0.80[CHB][hapmap]
rs11659684	0.83[EUR][1000 genomes]
rs11662144	0.83[EUR][1000 genomes]
rs11662174	0.83[EUR][1000 genomes]
rs11662183	0.83[EUR][1000 genomes]
rs11663144	0.83[EUR][1000 genomes]
rs4075294	0.83[EUR][1000 genomes]
rs4939733	0.83[EUR][1000 genomes]
rs4940275	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55661045	0.83[EUR][1000 genomes]
rs56139840	0.83[EUR][1000 genomes]
rs56267244	0.83[EUR][1000 genomes]
rs57710082	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72920081	0.83[EUR][1000 genomes]
rs72922114	0.82[EUR][1000 genomes]
rs8083305	0.83[EUR][1000 genomes]
rs8083469	0.83[EUR][1000 genomes]
rs8083557	0.85[EUR][1000 genomes]
rs8083615	0.83[EUR][1000 genomes]
rs8083937	0.83[EUR][1000 genomes]
rs8084118	0.83[EUR][1000 genomes]
rs9973062	0.82[EUR][1000 genomes]
rs9973065	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45642400-45657200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
3	chr18:45650000-45659400	Weak transcription	Lung	lung
4	chr18:45650600-45660600	Weak transcription	Fetal Intestine Small	intestine
5	chr18:45651200-45659000	Weak transcription	Colonic Mucosa	Colon
6	chr18:45651400-45659400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr18:45652400-45658600	Weak transcription	Hela-S3	cervix
8	chr18:45653600-45659200	Weak transcription	Gastric	stomach
9	chr18:45653800-45657000	Enhancers	Fetal Muscle Leg	muscle
10	chr18:45654200-45658600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr18:45655200-45657000	Enhancers	Liver	Liver
12	chr18:45655600-45657000	Enhancers	Fetal Kidney	kidney
13	chr18:45655600-45659000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:45655800-45657000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr18:45656200-45657000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr18:45656200-45658200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr18:45656400-45659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr18:45656600-45657600	Weak transcription	Stomach Mucosa	stomach
19	chr18:45656600-45659200	Weak transcription	Fetal Stomach	stomach
20	chr18:45656600-45659400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr18:45656600-45659400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr18:45656600-45659400	Weak transcription	Placenta	Placenta
23	chr18:45656600-45659400	Weak transcription	Ovary	ovary
24	chr18:45656800-45657000	Enhancers	Esophagus	oesophagus
25	chr18:45656800-45661200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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