Variant report

Variant	rs11662144
Chromosome Location	chr18:45651369-45651370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45649951..45652200-chr18:45653862..45656288,2	K562	blood:
2	chr18:45650799..45652608-chr18:45657316..45660495,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11082650	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11082651	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11082652	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11082654	0.83[EUR][1000 genomes]
rs11659684	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11662174	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662183	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11663144	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4075294	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4939733	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4940270	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4940275	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55661045	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56139840	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56267244	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57710082	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72920081	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8083305	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8083469	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8083557	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8083615	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8083937	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8084118	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9957041	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45642400-45657200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
3	chr18:45648200-45651400	Enhancers	Fetal Muscle Trunk	muscle
4	chr18:45648400-45653000	Enhancers	Placenta	Placenta
5	chr18:45648600-45652200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:45648800-45651400	Enhancers	Fetal Muscle Leg	muscle
7	chr18:45649000-45651800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr18:45649200-45651400	Enhancers	Ovary	ovary
9	chr18:45649200-45652000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr18:45649400-45653000	Enhancers	Stomach Mucosa	stomach
11	chr18:45649600-45651600	Enhancers	Fetal Kidney	kidney
12	chr18:45650000-45653000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:45650000-45655400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr18:45650000-45659400	Weak transcription	Lung	lung
15	chr18:45650400-45651400	Enhancers	Hela-S3	cervix
16	chr18:45650400-45652400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:45650400-45652400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr18:45650400-45653800	Genic enhancers	Esophagus	oesophagus
19	chr18:45650400-45655200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr18:45650600-45651800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr18:45650600-45653600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr18:45650600-45660600	Weak transcription	Fetal Intestine Small	intestine
23	chr18:45650800-45651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr18:45651000-45651400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr18:45651000-45652200	Enhancers	GM12878-XiMat	blood
26	chr18:45651000-45652600	Enhancers	Spleen	Spleen
27	chr18:45651200-45651400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr18:45651200-45651400	Enhancers	Brain Hippocampus Middle	brain
29	chr18:45651200-45651400	Enhancers	Duodenum Mucosa	Duodenum
30	chr18:45651200-45651400	Enhancers	Gastric	stomach
31	chr18:45651200-45651400	Bivalent Enhancer	HSMMtube	muscle
32	chr18:45651200-45652000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr18:45651200-45655600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr18:45651200-45659000	Weak transcription	Colonic Mucosa	Colon

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