Variant report

Variant	rs57710082
Chromosome Location	chr18:45653664-45653665
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11082650	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11082651	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11082652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11082654	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11659684	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11662144	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11662174	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11662183	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11663144	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4075294	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4939733	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4940270	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4940275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55661045	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56139840	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56267244	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72920081	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8083305	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8083469	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8083557	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8083615	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8083937	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8084118	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9957041	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45642400-45657200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
3	chr18:45650000-45655400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr18:45650000-45659400	Weak transcription	Lung	lung
5	chr18:45650400-45653800	Genic enhancers	Esophagus	oesophagus
6	chr18:45650400-45655200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr18:45650600-45660600	Weak transcription	Fetal Intestine Small	intestine
8	chr18:45651200-45655600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:45651200-45659000	Weak transcription	Colonic Mucosa	Colon
10	chr18:45651400-45659400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr18:45651600-45655600	Weak transcription	Fetal Kidney	kidney
12	chr18:45651800-45655800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr18:45652000-45655800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:45652000-45656200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr18:45652200-45653800	Weak transcription	Fetal Muscle Leg	muscle
16	chr18:45652400-45655200	Weak transcription	Liver	Liver
17	chr18:45652400-45656200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr18:45652400-45658600	Weak transcription	Hela-S3	cervix
19	chr18:45652800-45653800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr18:45653000-45654200	Enhancers	Spleen	Spleen
21	chr18:45653000-45654600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr18:45653000-45655400	Weak transcription	Placenta	Placenta
23	chr18:45653000-45655800	Weak transcription	Stomach Mucosa	stomach
24	chr18:45653400-45654200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr18:45653400-45654400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr18:45653400-45654600	Enhancers	Ovary	ovary
27	chr18:45653600-45654200	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr18:45653600-45659200	Weak transcription	Gastric	stomach

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