Variant report

Variant	rs8084118
Chromosome Location	chr18:45646458-45646459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11082650	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11082651	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11082652	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11082654	0.83[EUR][1000 genomes]
rs11659684	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11662144	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11662174	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11662183	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11663144	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4075294	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4939733	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4940270	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4940275	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55661045	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56139840	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56267244	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57710082	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72920081	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8083305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083615	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8083937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9957041	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45634200-45650400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:45634400-45650400	Weak transcription	Hela-S3	cervix
3	chr18:45637200-45647800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr18:45637200-45648800	Weak transcription	Stomach Mucosa	stomach
5	chr18:45637200-45649400	Weak transcription	Colonic Mucosa	Colon
6	chr18:45637600-45647200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr18:45637600-45648200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr18:45638200-45649400	Weak transcription	Fetal Stomach	stomach
9	chr18:45640200-45649000	Weak transcription	Spleen	Spleen
10	chr18:45640200-45649200	Weak transcription	Ovary	ovary
11	chr18:45640400-45649600	Weak transcription	Lung	lung
12	chr18:45640400-45649600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr18:45640600-45648200	Weak transcription	Gastric	stomach
14	chr18:45642400-45657200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr18:45643200-45649000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr18:45645400-45646600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr18:45645400-45646600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr18:45645400-45646600	Enhancers	HMEC	breast
19	chr18:45645400-45646600	Enhancers	NHEK	skin
20	chr18:45645800-45649600	Weak transcription	Fetal Kidney	kidney
21	chr18:45646000-45648400	Genic enhancers	Esophagus	oesophagus
22	chr18:45646200-45649800	Weak transcription	Fetal Intestine Small	intestine
23	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
24	chr18:45646400-45648400	Weak transcription	Placenta	Placenta

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