Variant report

Variant	rs11096
Chromosome Location	chr9:108159288-108159289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10991625	0.86[EUR][1000 genomes]
rs10991630	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10991632	0.86[EUR][1000 genomes]
rs10991633	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10991634	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10991636	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10991638	0.93[EUR][1000 genomes]
rs10991640	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10991641	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10991643	0.93[EUR][1000 genomes]
rs10991644	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10991645	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12377753	0.86[EUR][1000 genomes]
rs12377755	0.86[EUR][1000 genomes]
rs12379026	0.86[EUR][1000 genomes]
rs12379533	0.90[EUR][1000 genomes]
rs12380580	1.00[CEU][hapmap]
rs1360087	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1410838	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17246769	1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs1969981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2149591	0.93[EUR][1000 genomes]
rs2417641	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2771032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2771034	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2771043	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2812313	0.93[EUR][1000 genomes]
rs2812317	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73514068	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108096200-108164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:108125000-108166800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
4	chr9:108148200-108160200	Weak transcription	Ovary	ovary
5	chr9:108148400-108160400	Weak transcription	Fetal Intestine Large	intestine
6	chr9:108148400-108168000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:108148800-108165600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:108152600-108166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:108153600-108163800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:108153600-108163800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:108155000-108164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:108155600-108164200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:108155600-108165600	Weak transcription	Brain Anterior Caudate	brain
15	chr9:108155800-108163800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:108156800-108165800	Weak transcription	Fetal Brain Male	brain
17	chr9:108157400-108161000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:108157400-108161000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:108157400-108161400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:108157400-108163200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:108157600-108160400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:108157600-108160400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:108157600-108160600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr9:108157600-108160800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:108157600-108160800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:108158600-108159800	Enhancers	Brain Substantia Nigra	brain
27	chr9:108158600-108160000	Enhancers	Brain Angular Gyrus	brain
28	chr9:108158600-108160600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:108158600-108162000	Enhancers	Fetal Lung	lung
30	chr9:108158800-108159400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:108158800-108159400	Enhancers	Brain Hippocampus Middle	brain
32	chr9:108159000-108159400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:108159200-108159400	Enhancers	Brain Cingulate Gyrus	brain
34	chr9:108159200-108159600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links