Variant report

Variant	rs2812313
Chromosome Location	chr9:108167109-108167110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108006964..108008816-chr9:108165166..108168105,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10991625	0.86[EUR][1000 genomes]
rs10991630	0.86[EUR][1000 genomes]
rs10991632	0.86[EUR][1000 genomes]
rs10991633	0.86[EUR][1000 genomes]
rs10991634	0.86[EUR][1000 genomes]
rs10991636	0.86[EUR][1000 genomes]
rs10991638	0.93[EUR][1000 genomes]
rs10991640	0.90[EUR][1000 genomes]
rs10991641	0.97[EUR][1000 genomes]
rs10991643	0.93[EUR][1000 genomes]
rs10991644	0.97[EUR][1000 genomes]
rs10991645	0.93[EUR][1000 genomes]
rs11096	0.93[EUR][1000 genomes]
rs12377753	0.86[EUR][1000 genomes]
rs12377755	0.86[EUR][1000 genomes]
rs12379026	0.86[EUR][1000 genomes]
rs12379533	0.97[EUR][1000 genomes]
rs1360087	0.93[EUR][1000 genomes]
rs1410838	0.97[EUR][1000 genomes]
rs17246769	0.89[EUR][1000 genomes]
rs1969981	0.93[EUR][1000 genomes]
rs2149591	0.93[EUR][1000 genomes]
rs2417641	0.93[EUR][1000 genomes]
rs2771032	0.93[EUR][1000 genomes]
rs2771034	0.97[EUR][1000 genomes]
rs2771043	0.97[EUR][1000 genomes]
rs2812317	0.93[EUR][1000 genomes]
rs73514068	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
2	chr9:108148400-108168000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:108163200-108168400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:108163800-108167400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:108164200-108167200	Enhancers	Brain Substantia Nigra	brain
7	chr9:108164400-108167800	Weak transcription	Fetal Heart	heart
8	chr9:108164600-108167800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:108165400-108167800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:108165600-108167200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:108165600-108170000	Enhancers	Dnd41	blood
12	chr9:108165800-108167200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:108166000-108167800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:108166200-108167200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
15	chr9:108166200-108167400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:108166200-108167800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:108166200-108168400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:108166200-108169400	Weak transcription	Brain Anterior Caudate	brain
19	chr9:108166200-108171600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:108166400-108167200	Bivalent Enhancer	Fetal Thymus	thymus
21	chr9:108166400-108167400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:108166400-108167400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
23	chr9:108166600-108167200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:108166600-108167400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr9:108166600-108167600	Enhancers	Primary T cells from cord blood	blood
26	chr9:108166600-108168000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr9:108166600-108168000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:108166600-108169000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr9:108166800-108167200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:108166800-108167200	Bivalent Enhancer	Thymus	Thymus
31	chr9:108166800-108167400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr9:108166800-108168200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr9:108166800-108168200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:108166800-108168400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr9:108167000-108168000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:108167000-108168400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr9:108167000-108168600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr9:108167000-108168600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:108167000-108168800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr9:108167000-108168800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr9:108167000-108168800	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr9:108167000-108172600	Weak transcription	Brain Hippocampus Middle	brain

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