Variant report

Variant	rs2771032
Chromosome Location	chr9:108157462-108157463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108153124..108158591-chr9:108160157..108165830,7	MCF-7	breast:
2	chr9:108150925..108153260-chr9:108154410..108158072,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10991625	0.86[EUR][1000 genomes]
rs10991630	0.86[EUR][1000 genomes]
rs10991632	0.86[EUR][1000 genomes]
rs10991633	0.86[EUR][1000 genomes]
rs10991634	0.86[EUR][1000 genomes]
rs10991636	0.86[EUR][1000 genomes]
rs10991638	0.93[EUR][1000 genomes]
rs10991640	0.90[EUR][1000 genomes]
rs10991641	0.90[EUR][1000 genomes]
rs10991643	0.93[EUR][1000 genomes]
rs10991644	0.90[EUR][1000 genomes]
rs10991645	0.87[EUR][1000 genomes]
rs11096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12377753	0.86[EUR][1000 genomes]
rs12377755	0.86[EUR][1000 genomes]
rs12379026	0.86[EUR][1000 genomes]
rs12379533	0.90[EUR][1000 genomes]
rs1360087	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1410838	0.90[EUR][1000 genomes]
rs17246769	0.89[EUR][1000 genomes]
rs1969981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2149591	0.93[EUR][1000 genomes]
rs2417641	1.00[EUR][1000 genomes]
rs2771034	0.90[EUR][1000 genomes]
rs2771043	0.90[EUR][1000 genomes]
rs2812313	0.93[EUR][1000 genomes]
rs2812317	1.00[EUR][1000 genomes]
rs73514068	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108096200-108164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:108125000-108166800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:108137800-108158200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
5	chr9:108148200-108158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:108148200-108158800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:108148200-108160200	Weak transcription	Ovary	ovary
8	chr9:108148400-108158600	Weak transcription	Fetal Lung	lung
9	chr9:108148400-108160400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:108148400-108168000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:108148600-108158200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:108148800-108165600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:108152600-108157600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr9:108152600-108166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:108152800-108159200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:108153600-108163800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:108153600-108163800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:108155000-108164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:108155400-108158600	Weak transcription	Brain Angular Gyrus	brain
20	chr9:108155400-108158600	Weak transcription	Brain Substantia Nigra	brain
21	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:108155600-108158800	Weak transcription	Fetal Brain Female	brain
23	chr9:108155600-108164200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:108155600-108165600	Weak transcription	Brain Anterior Caudate	brain
25	chr9:108155800-108163800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr9:108156000-108157600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr9:108156200-108157600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr9:108156600-108158600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:108156800-108158600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr9:108156800-108165800	Weak transcription	Fetal Brain Male	brain
31	chr9:108157000-108157600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr9:108157000-108157600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:108157000-108158000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:108157000-108158600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:108157200-108158200	Weak transcription	Brain Hippocampus Middle	brain
36	chr9:108157400-108161000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:108157400-108161000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr9:108157400-108161400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:108157400-108163200	Weak transcription	H9 Cell Line	embryonic stem cell

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