Variant report

Variant	rs1360087
Chromosome Location	chr9:108155346-108155347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108154477..108157251-chr9:108163904..108166512,2	MCF-7	breast:
2	chr9:108153124..108158591-chr9:108160157..108165830,7	MCF-7	breast:
3	chr9:108150925..108153260-chr9:108154410..108158072,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10991630	1.00[CEU][hapmap]
rs10991633	1.00[CEU][hapmap]
rs10991634	1.00[CEU][hapmap]
rs10991636	1.00[CEU][hapmap]
rs10991638	0.93[EUR][1000 genomes]
rs10991640	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10991641	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10991643	0.93[EUR][1000 genomes]
rs10991644	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10991645	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11096	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12379533	0.97[EUR][1000 genomes]
rs12380580	1.00[CEU][hapmap]
rs1410838	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17246769	0.89[EUR][1000 genomes]
rs1969981	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2149591	0.93[EUR][1000 genomes]
rs2417641	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2771032	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2771034	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2771043	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2812313	0.93[EUR][1000 genomes]
rs2812317	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs73514068	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108096200-108164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:108121600-108157000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:108125000-108166800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:108125600-108157000	Weak transcription	Osteobl	bone
5	chr9:108137800-108155400	Weak transcription	Lung	lung
6	chr9:108137800-108156200	Weak transcription	Fetal Stomach	stomach
7	chr9:108137800-108156400	Weak transcription	Aorta	Aorta
8	chr9:108137800-108157200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:108137800-108158200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:108138000-108156400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:108138000-108156400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:108143600-108157000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
14	chr9:108148200-108155800	Weak transcription	Adipose Nuclei	Adipose
15	chr9:108148200-108156200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:108148200-108158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:108148200-108158800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:108148200-108160200	Weak transcription	Ovary	ovary
19	chr9:108148400-108155400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr9:108148400-108155800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:108148400-108156200	Weak transcription	Primary T cells from cord blood	blood
22	chr9:108148400-108156600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:108148400-108158600	Weak transcription	Fetal Lung	lung
24	chr9:108148400-108160400	Weak transcription	Fetal Intestine Large	intestine
25	chr9:108148400-108168000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:108148600-108158200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:108148800-108165600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:108149000-108155600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:108149800-108155400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr9:108150000-108156800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr9:108151200-108155400	Enhancers	Brain Cingulate Gyrus	brain
32	chr9:108151400-108155600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:108151800-108155400	Enhancers	Brain Angular Gyrus	brain
34	chr9:108151800-108155600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:108151800-108155600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr9:108151800-108156800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:108152200-108157200	Enhancers	Brain Hippocampus Middle	brain
38	chr9:108152400-108155400	Enhancers	Brain Substantia Nigra	brain
39	chr9:108152400-108155800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr9:108152400-108156800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:108152600-108157000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:108152600-108157600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr9:108152600-108166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:108152800-108155800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr9:108152800-108159200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:108153200-108155400	Enhancers	H1 Cell Line	embryonic stem cell
47	chr9:108153200-108156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:108153400-108155400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr9:108153400-108155600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:108153600-108163800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links