Variant report

Variant	rs11096659
Chromosome Location	chr2:20571631-20571632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20564625..20568805-chr2:20571129..20576493,6	MCF-7	breast:
2	chr2:20571196..20572728-chr2:20579213..20580832,2	MCF-7	breast:
3	chr2:20570098..20572702-chr2:20619357..20621600,2	MCF-7	breast:
4	chr2:20569349..20572195-chr2:20573816..20575777,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10175853	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10192042	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1043400	0.84[EUR][1000 genomes]
rs10460445	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460449	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460450	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460451	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11096654	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11888357	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11895228	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11896241	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11898408	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11900127	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11902769	0.84[EUR][1000 genomes]
rs11903745	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12465832	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12473500	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12474897	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12478265	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17612703	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2080190	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2348703	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2820	0.87[EUR][1000 genomes]
rs3796066	0.85[EUR][1000 genomes]
rs3821218	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6748274	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72785297	0.85[EUR][1000 genomes]
rs72785298	0.85[EUR][1000 genomes]
rs72785300	0.85[EUR][1000 genomes]
rs72785301	0.84[EUR][1000 genomes]
rs72787406	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72787409	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72787411	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72787415	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72787433	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72787499	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72787500	0.87[EUR][1000 genomes]
rs72787501	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72788905	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72788906	0.87[EUR][1000 genomes]
rs7558385	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7558833	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7579571	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7582642	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9306890	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9306891	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20565800-20575200	Weak transcription	NH-A	brain
3	chr2:20569000-20571800	Enhancers	NHEK	skin
4	chr2:20569600-20574200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:20570200-20574800	Weak transcription	Placenta	Placenta
6	chr2:20570200-20578600	Weak transcription	Ovary	ovary
7	chr2:20570800-20571800	Weak transcription	Fetal Brain Male	brain
8	chr2:20571000-20571800	Enhancers	Fetal Stomach	stomach
9	chr2:20571200-20571800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:20571200-20571800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:20571200-20571800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:20571200-20571800	Flanking Active TSS	Fetal Brain Female	brain
13	chr2:20571200-20571800	Enhancers	Fetal Muscle Leg	muscle
14	chr2:20571400-20571800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:20571600-20571800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:20571600-20571800	Flanking Active TSS	Fetal Lung	lung
17	chr2:20571600-20572200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr2:20571600-20575000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links