Variant report

Variant	rs2080190
Chromosome Location	chr2:20555483-20555484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10175853	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10187080	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10192042	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10206974	0.81[AMR][1000 genomes]
rs1043400	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10460445	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460450	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460451	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10856797	0.82[AMR][1000 genomes]
rs11096654	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11096659	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11888357	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11895228	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11896241	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11898408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11900127	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11902769	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11903745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12465832	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12473500	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12474897	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12478265	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17612703	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2072464	0.80[EUR][1000 genomes]
rs2348703	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2820	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3796066	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3821218	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6748274	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72785218	0.80[EUR][1000 genomes]
rs72785278	0.80[EUR][1000 genomes]
rs72785282	0.80[EUR][1000 genomes]
rs72785295	0.81[EUR][1000 genomes]
rs72785297	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72785298	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72785300	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72785301	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72787406	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72787409	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72787411	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72787415	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72787433	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72787499	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72787500	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72787501	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72788905	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72788906	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs741188	0.80[EUR][1000 genomes]
rs7558385	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7558833	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7579571	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7582642	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7595266	0.80[EUR][1000 genomes]
rs9306890	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9306891	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20551600-20555800	Weak transcription	NHLF	lung
2	chr2:20551600-20556000	Weak transcription	Osteobl	bone
3	chr2:20551600-20568800	Weak transcription	Psoas Muscle	Psoas
4	chr2:20551800-20555800	Weak transcription	HSMM	muscle
5	chr2:20551800-20555800	Weak transcription	NHDF-Ad	bronchial
6	chr2:20552000-20556400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:20552200-20555800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:20552200-20555800	Weak transcription	Lung	lung
9	chr2:20552200-20556000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:20552200-20556000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:20552200-20556400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:20552200-20557600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr2:20552200-20557600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:20552200-20562600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr2:20552200-20565000	Weak transcription	Esophagus	oesophagus
16	chr2:20552400-20556000	Weak transcription	A549	lung
17	chr2:20552400-20558800	Weak transcription	Stomach Mucosa	stomach
18	chr2:20552600-20555600	Weak transcription	Liver	Liver
19	chr2:20552600-20556000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:20552800-20556000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:20553400-20556000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:20553600-20565000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:20553800-20556000	Weak transcription	Fetal Muscle Leg	muscle
24	chr2:20553800-20556000	Weak transcription	GM12878-XiMat	blood
25	chr2:20553800-20556400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:20554000-20555800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:20554000-20556200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:20554200-20555600	Weak transcription	NHEK	skin
29	chr2:20554200-20555800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:20554200-20562600	Weak transcription	Placenta	Placenta
31	chr2:20554600-20556000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr2:20555000-20556400	Enhancers	HepG2	liver
33	chr2:20555200-20556400	Enhancers	NH-A	brain
34	chr2:20555200-20556800	Enhancers	HMEC	breast
35	chr2:20555400-20556000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:20555400-20556800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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