The 2.0 version of rSNPBase

Variant report

Variant rs72787499
Chromosome Location chr2:20536199-20536200
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20522800-20537400 Weak transcription NHLF lung
2 chr2:20523000-20547600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr2:20523600-20537000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr2:20524400-20546400 Weak transcription NH-A brain
5 chr2:20526000-20544800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr2:20526600-20539400 Weak transcription HSMM muscle
7 chr2:20526800-20538200 Weak transcription HUVEC blood vessel
8 chr2:20527800-20544800 Weak transcription Placenta Placenta
9 chr2:20527800-20548200 Weak transcription Placenta Amnion Placenta Amnion
10 chr2:20527800-20549200 Weak transcription Aorta Aorta
11 chr2:20528200-20546600 Weak transcription Hela-S3 cervix
12 chr2:20528600-20536200 ZNF genes & repeats GM12878-XiMat blood
13 chr2:20528600-20546400 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr2:20529200-20536400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr2:20530800-20540000 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr2:20530800-20546200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr2:20531000-20539000 Weak transcription Fetal Brain Female brain
18 chr2:20531000-20544600 Weak transcription Fetal Brain Male brain
19 chr2:20531000-20549200 Weak transcription H9 Cell Line embryonic stem cell
20 chr2:20531200-20539000 Weak transcription Brain Germinal Matrix brain
21 chr2:20531200-20546400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr2:20531400-20539400 Weak transcription Fetal Intestine Large intestine
23 chr2:20531400-20546400 Weak transcription Fetal Kidney kidney
24 chr2:20531400-20547800 Weak transcription Fetal Muscle Trunk muscle
25 chr2:20531800-20547400 Weak transcription Fetal Muscle Leg muscle
26 chr2:20532000-20537200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr2:20532000-20539000 Weak transcription Fetal Intestine Small intestine
28 chr2:20532000-20542200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
29 chr2:20532000-20547400 Weak transcription Primary monocytes fromperipheralblood blood
30 chr2:20532400-20542400 Enhancers Primary T killer memory cells from peripheral blood blood
31 chr2:20532400-20545400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
32 chr2:20533000-20538400 Enhancers Primary B cells from peripheral blood blood
33 chr2:20533000-20541800 Enhancers Primary T killer naive cells fromperipheralblood blood
34 chr2:20533200-20536200 Enhancers Colon Smooth Muscle Colon
35 chr2:20533400-20536200 Enhancers Brain Hippocampus Middle brain
36 chr2:20533400-20536600 Enhancers Brain Cingulate Gyrus brain
37 chr2:20533400-20543800 Weak transcription Primary hematopoietic stem cells blood
38 chr2:20533600-20536400 Weak transcription Monocytes-CD14+_RO01746 blood
39 chr2:20533600-20537600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr2:20533600-20537800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr2:20533600-20538000 Enhancers Fetal Adrenal Gland Adrenal Gland
42 chr2:20533600-20539600 Enhancers Primary T helper cells PMA-I stimulated --
43 chr2:20533800-20539400 Enhancers Primary B cells from cord blood blood
44 chr2:20533800-20540000 Weak transcription Dnd41 blood
45 chr2:20533800-20540200 Enhancers Primary T regulatory cells fromperipheralblood blood
46 chr2:20533800-20540200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr2:20533800-20545200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr2:20533800-20549400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr2:20534200-20536200 Enhancers HUES48 Cell Line embryonic stem cell
50 chr2:20534200-20536200 Enhancers iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015