The 2.0 version of rSNPBase

Variant report

Variant rs72788905
Chromosome Location chr2:20547178-20547179
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20523000-20547600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr2:20527800-20548200 Weak transcription Placenta Amnion Placenta Amnion
3 chr2:20527800-20549200 Weak transcription Aorta Aorta
4 chr2:20531000-20549200 Weak transcription H9 Cell Line embryonic stem cell
5 chr2:20531400-20547800 Weak transcription Fetal Muscle Trunk muscle
6 chr2:20531800-20547400 Weak transcription Fetal Muscle Leg muscle
7 chr2:20532000-20547400 Weak transcription Primary monocytes fromperipheralblood blood
8 chr2:20533800-20549400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr2:20534800-20547400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr2:20535000-20547400 Enhancers Primary T helper naive cells fromperipheralblood blood
11 chr2:20536400-20547600 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr2:20536600-20547400 Weak transcription HMEC breast
13 chr2:20537800-20547400 Weak transcription Brain Hippocampus Middle brain
14 chr2:20538400-20547400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr2:20540200-20547400 Enhancers Primary T helper cells PMA-I stimulated --
16 chr2:20540400-20547200 Enhancers Primary B cells from peripheral blood blood
17 chr2:20540600-20547400 Enhancers Primary T cells from cord blood blood
18 chr2:20541600-20547600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr2:20542200-20547400 Weak transcription Monocytes-CD14+_RO01746 blood
20 chr2:20542200-20548200 Enhancers Primary T helper naive cells from peripheral blood blood
21 chr2:20542400-20547200 Enhancers Primary T helper cells fromperipheralblood blood
22 chr2:20542400-20548400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr2:20542800-20548400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr2:20543400-20547600 Enhancers Primary T helper 17 cells PMA-I stimulated --
25 chr2:20543400-20548200 Enhancers Primary T killer naive cells fromperipheralblood blood
26 chr2:20543400-20548200 Enhancers Primary T killer memory cells from peripheral blood blood
27 chr2:20543600-20547400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr2:20544000-20547600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr2:20544000-20548800 Enhancers Fetal Heart heart
30 chr2:20544200-20547400 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr2:20545000-20548400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr2:20545200-20547600 Weak transcription Gastric stomach
33 chr2:20545200-20549600 Weak transcription Esophagus oesophagus
34 chr2:20545400-20547400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr2:20545400-20547400 Weak transcription Fetal Thymus thymus
36 chr2:20545400-20547600 Weak transcription Pancreas Pancrea
37 chr2:20545400-20548200 Weak transcription Placenta Placenta
38 chr2:20545400-20548200 Weak transcription Thymus Thymus
39 chr2:20545400-20548400 Weak transcription Left Ventricle heart
40 chr2:20545400-20548600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr2:20545600-20547400 Weak transcription Primary T cells fromperipheralblood blood
42 chr2:20545600-20547600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr2:20545600-20547600 Enhancers Primary mononuclear cells fromperipheralblood Blood
44 chr2:20545600-20547600 Weak transcription Lung lung
45 chr2:20545600-20548400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr2:20545800-20547400 Enhancers Fetal Brain Female brain
47 chr2:20545800-20547400 Enhancers Fetal Intestine Small intestine
48 chr2:20545800-20547400 Enhancers Fetal Lung lung
49 chr2:20545800-20547800 Enhancers Primary T regulatory cells fromperipheralblood blood
50 chr2:20545800-20548200 Enhancers Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015