Variant report

Variant	rs11097026
Chromosome Location	chr4:85803607-85803608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85802831..85804708-chr4:85806036..85808282,2	K562	blood:

Variant related genes	Relation type
ENSG00000252062	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10029496	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10856851	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10856852	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11730981	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732309	0.82[EUR][1000 genomes]
rs11732347	0.82[EUR][1000 genomes]
rs12498637	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12498787	0.83[EUR][1000 genomes]
rs12500519	0.81[EUR][1000 genomes]
rs12503215	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12506456	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12510410	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12511112	0.94[ASW][hapmap]
rs12640378	0.83[EUR][1000 genomes]
rs12648852	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13109918	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13114115	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13118671	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs13124246	0.83[EUR][1000 genomes]
rs13141322	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13145705	0.82[AMR][1000 genomes]
rs13148035	0.82[EUR][1000 genomes]
rs1484660	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1508670	0.81[CEU][hapmap]
rs17009317	0.81[CEU][hapmap]
rs17009334	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs17009341	1.00[CEU][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2046402	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2046404	1.00[CEU][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2170935	0.82[AMR][1000 genomes]
rs2869216	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28754901	0.86[EUR][1000 genomes]
rs34239067	0.83[EUR][1000 genomes]
rs34314581	0.83[EUR][1000 genomes]
rs35190829	0.83[EUR][1000 genomes]
rs4131745	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4376130	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4464556	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4470615	0.82[EUR][1000 genomes]
rs4533765	0.86[EUR][1000 genomes]
rs4624645	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4626191	0.82[EUR][1000 genomes]
rs4634212	0.81[EUR][1000 genomes]
rs56194765	0.82[EUR][1000 genomes]
rs6531775	0.84[AMR][1000 genomes]
rs6531777	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[MKK][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6531782	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs67045782	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6833661	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6835046	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6847811	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6857555	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6858666	0.84[AMR][1000 genomes]
rs72664926	0.85[AMR][1000 genomes]
rs72664934	0.95[AMR][1000 genomes]
rs72664952	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7654035	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7661609	1.00[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7663580	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7675324	0.83[EUR][1000 genomes]
rs7694949	1.00[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7695054	0.81[EUR][1000 genomes]
rs7699226	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9684737	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9790649	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv879515	chr4:85789940-85843244	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
2	chr4:85778000-85813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:85778000-85836600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:85778800-85832800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:85779800-85828800	Weak transcription	Spleen	Spleen
6	chr4:85781800-85808200	Weak transcription	Adipose Nuclei	Adipose
7	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:85782200-85810800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:85782200-85814800	Weak transcription	Fetal Intestine Small	intestine
10	chr4:85783400-85814200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:85783600-85826600	Weak transcription	Ovary	ovary
12	chr4:85791800-85808200	Weak transcription	Aorta	Aorta
13	chr4:85792000-85824400	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:85792000-85825000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:85792000-85828600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:85792400-85808400	Weak transcription	Fetal Heart	heart
17	chr4:85793200-85815600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:85793600-85815400	Weak transcription	Fetal Stomach	stomach
19	chr4:85795000-85814200	Weak transcription	Fetal Kidney	kidney
20	chr4:85797600-85804000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:85798400-85833400	Weak transcription	Fetal Brain Female	brain
22	chr4:85798800-85815800	Weak transcription	Left Ventricle	heart
23	chr4:85798800-85823400	Weak transcription	Gastric	stomach
24	chr4:85798800-85824600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:85798800-85873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:85799600-85841600	Weak transcription	HMEC	breast
27	chr4:85800000-85822200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr4:85800000-85824400	Weak transcription	NHEK	skin
29	chr4:85800200-85807800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr4:85800600-85808200	Weak transcription	NHLF	lung
31	chr4:85800800-85808000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:85800800-85808200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:85801200-85807600	Weak transcription	Brain Substantia Nigra	brain
34	chr4:85801200-85816600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:85801400-85808200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:85801400-85808400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:85801400-85808400	Weak transcription	Brain Anterior Caudate	brain
38	chr4:85801400-85808600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:85801400-85809800	Weak transcription	Brain Angular Gyrus	brain
40	chr4:85801400-85813600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:85801400-85814200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:85801400-85822000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:85801400-85825000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:85801400-85843800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:85801600-85808200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr4:85801600-85808200	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:85801600-85808200	Weak transcription	NHDF-Ad	bronchial
48	chr4:85801600-85808600	Weak transcription	NH-A	brain
49	chr4:85801600-85811400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:85801600-85813800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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