Variant report

Variant	rs4464556
Chromosome Location	chr4:85794934-85794935
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85790704..85793201-chr4:85794396..85796938,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10029496	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10856851	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10856852	0.82[EUR][1000 genomes]
rs11097026	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11730981	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12498637	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12503215	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12506456	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510410	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12648852	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13109918	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13114115	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13141322	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1484660	0.87[AMR][1000 genomes]
rs17009341	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2046402	0.86[AMR][1000 genomes]
rs2046404	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2869216	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28754901	0.82[EUR][1000 genomes]
rs34314581	0.80[EUR][1000 genomes]
rs4131745	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4376130	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4533765	0.82[EUR][1000 genomes]
rs4624645	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6531777	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67045782	0.90[AMR][1000 genomes]
rs6833661	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6835046	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6847811	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6857555	0.87[AMR][1000 genomes]
rs72664934	0.87[AMR][1000 genomes]
rs72664952	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7654035	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7661609	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7694949	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7699226	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9684737	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv879515	chr4:85789940-85843244	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
2	chr4:85771200-85798200	Weak transcription	Left Ventricle	heart
3	chr4:85771200-85803200	Weak transcription	Brain Germinal Matrix	brain
4	chr4:85778000-85800000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:85778000-85813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:85778000-85836600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:85778800-85832800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:85779800-85828800	Weak transcription	Spleen	Spleen
9	chr4:85781200-85795000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:85781800-85798200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:85781800-85798200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:85781800-85800200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:85781800-85802400	Weak transcription	Fetal Intestine Large	intestine
14	chr4:85781800-85808200	Weak transcription	Adipose Nuclei	Adipose
15	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:85782000-85798600	Weak transcription	Liver	Liver
17	chr4:85782200-85796400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr4:85782200-85810800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:85782200-85814800	Weak transcription	Fetal Intestine Small	intestine
20	chr4:85783200-85798800	Weak transcription	Brain Angular Gyrus	brain
21	chr4:85783400-85814200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:85783600-85798800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:85783600-85826600	Weak transcription	Ovary	ovary
24	chr4:85788000-85798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:85790600-85800000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:85791600-85799600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr4:85791800-85796800	Weak transcription	K562	blood
28	chr4:85791800-85808200	Weak transcription	Aorta	Aorta
29	chr4:85792000-85796600	Weak transcription	Lung	lung
30	chr4:85792000-85798400	Weak transcription	Gastric	stomach
31	chr4:85792000-85800200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:85792000-85800200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:85792000-85824400	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:85792000-85825000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:85792000-85828600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:85792200-85798400	Weak transcription	HMEC	breast
37	chr4:85792400-85795800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:85792400-85798000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:85792400-85798000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:85792400-85798000	Weak transcription	Colon Smooth Muscle	Colon
41	chr4:85792400-85798200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:85792400-85798200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:85792400-85798200	Weak transcription	HSMMtube	muscle
44	chr4:85792400-85798600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:85792400-85808400	Weak transcription	Fetal Heart	heart
46	chr4:85792600-85798000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:85792600-85798200	Weak transcription	NHEK	skin
48	chr4:85792600-85798400	Weak transcription	A549	lung
49	chr4:85792600-85798400	Weak transcription	HSMM	muscle
50	chr4:85793000-85795600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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