Variant report

Variant	rs6857555
Chromosome Location	chr4:85768715-85768716
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85768280..85770094-chr4:85885997..85888803,2	MCF-7	breast:
2	chr4:85764070..85765619-chr4:85768603..85770984,2	K562	blood:
3	chr4:85763786..85765619-chr4:85768603..85770984,3	K562	blood:

Variant related genes	Relation type
ENSG00000163625	Chromatin interaction
ENSG00000180769	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10007879	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10029496	0.87[AMR][1000 genomes]
rs10856851	0.92[AMR][1000 genomes]
rs11097026	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11730981	0.87[AMR][1000 genomes]
rs12498637	0.86[AMR][1000 genomes]
rs12503215	0.87[AMR][1000 genomes]
rs12506456	0.87[AMR][1000 genomes]
rs12510410	0.86[AMR][1000 genomes]
rs12511112	0.81[EUR][1000 genomes]
rs12648852	0.84[AMR][1000 genomes]
rs13109918	0.86[AMR][1000 genomes]
rs13114115	0.92[AMR][1000 genomes]
rs13141322	0.92[AMR][1000 genomes]
rs13145705	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1385263	0.83[AMR][1000 genomes]
rs1484660	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17009341	0.87[AMR][1000 genomes]
rs2046402	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2046404	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2170935	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2869216	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4131745	0.91[AMR][1000 genomes]
rs4376130	0.82[AMR][1000 genomes]
rs4464556	0.87[AMR][1000 genomes]
rs4624645	0.87[AMR][1000 genomes]
rs6531775	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6531777	0.86[AMR][1000 genomes]
rs67045782	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6833661	0.84[AMR][1000 genomes]
rs6835046	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6847067	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6847811	0.87[AMR][1000 genomes]
rs6858666	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72664926	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72664934	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72664952	0.85[AMR][1000 genomes]
rs7654035	0.85[AMR][1000 genomes]
rs7661609	0.87[AMR][1000 genomes]
rs7685537	0.82[AMR][1000 genomes]
rs7694949	0.87[AMR][1000 genomes]
rs7699226	0.82[AMR][1000 genomes]
rs9684737	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85697400-85772800	Weak transcription	Small Intestine	intestine
2	chr4:85701600-85783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:85705400-85770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:85708600-85777400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:85709000-85769600	Weak transcription	Right Ventricle	heart
6	chr4:85709000-85781600	Weak transcription	Esophagus	oesophagus
7	chr4:85709200-85770200	Weak transcription	Psoas Muscle	Psoas
8	chr4:85722200-85787600	Weak transcription	Gastric	stomach
9	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
10	chr4:85723200-85770400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:85723200-85777000	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:85724000-85781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:85724000-85786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:85724200-85769600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:85727800-85783200	Weak transcription	Colonic Mucosa	Colon
16	chr4:85731400-85769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:85731400-85791600	Weak transcription	Lung	lung
18	chr4:85731800-85769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:85735800-85777000	Weak transcription	Aorta	Aorta
20	chr4:85736400-85769600	Weak transcription	A549	lung
21	chr4:85736400-85790600	Weak transcription	NHEK	skin
22	chr4:85739400-85777000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr4:85742600-85783200	Weak transcription	Fetal Brain Male	brain
24	chr4:85742800-85769600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:85742800-85777000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:85747200-85769600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:85749400-85769600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:85750400-85769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:85751600-85783000	Weak transcription	Stomach Mucosa	stomach
30	chr4:85751800-85770000	Weak transcription	HMEC	breast
31	chr4:85752000-85769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:85752000-85769600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:85753200-85783400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:85755000-85769800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:85756600-85769600	Weak transcription	Brain Hippocampus Middle	brain
36	chr4:85757600-85769600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr4:85759600-85769200	Weak transcription	Fetal Heart	heart
38	chr4:85760200-85777000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:85760800-85783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:85761400-85780200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:85761800-85769600	Weak transcription	Fetal Kidney	kidney
42	chr4:85762000-85769800	Weak transcription	Fetal Brain Female	brain
43	chr4:85762000-85769800	Weak transcription	Ovary	ovary
44	chr4:85762000-85770200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr4:85762000-85774000	Weak transcription	Fetal Intestine Small	intestine
46	chr4:85762000-85781400	Weak transcription	Fetal Stomach	stomach
47	chr4:85762200-85769000	Weak transcription	HSMMtube	muscle
48	chr4:85762200-85769600	Weak transcription	Brain Germinal Matrix	brain
49	chr4:85762200-85769600	Weak transcription	Placenta	Placenta
50	chr4:85762200-85769600	Weak transcription	Left Ventricle	heart

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