Variant report

Variant	rs10007879
Chromosome Location	chr4:85723668-85723669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11097024	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12511112	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13145705	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1385263	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1484660	0.85[ASN][1000 genomes]
rs17009247	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17009249	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2046402	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2170935	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2218323	0.86[EUR][1000 genomes]
rs2869216	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3098928	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4529041	0.80[EUR][1000 genomes]
rs6531775	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67045782	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835046	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6839516	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6847067	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6857555	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6858666	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72664926	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72664934	0.87[ASN][1000 genomes]
rs7668460	0.82[EUR][1000 genomes]
rs7685537	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv966528	chr4:85715067-85726976	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
2	chr4:85683800-85732000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:85684800-85725000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:85688800-85725600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:85690800-85725600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr4:85691000-85724800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:85696400-85757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:85697400-85772800	Weak transcription	Small Intestine	intestine
9	chr4:85698000-85724600	Strong transcription	Liver	Liver
10	chr4:85700200-85724600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:85701600-85783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:85702200-85732200	Weak transcription	Spleen	Spleen
13	chr4:85704200-85739800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:85704600-85724400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:85705200-85725400	Weak transcription	Aorta	Aorta
16	chr4:85705200-85735200	Weak transcription	A549	lung
17	chr4:85705400-85770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:85707200-85725200	Weak transcription	Stomach Mucosa	stomach
19	chr4:85708600-85731000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:85708600-85777400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:85708800-85741200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:85709000-85731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:85709000-85769600	Weak transcription	Right Ventricle	heart
24	chr4:85709000-85781600	Weak transcription	Esophagus	oesophagus
25	chr4:85709200-85749000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:85709200-85770200	Weak transcription	Psoas Muscle	Psoas
27	chr4:85711000-85725200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:85714200-85724800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:85716200-85725000	Weak transcription	Osteobl	bone
30	chr4:85717000-85724000	Weak transcription	Fetal Brain Male	brain
31	chr4:85717200-85724600	Strong transcription	HSMM	muscle
32	chr4:85718000-85725400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:85718200-85725000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:85718800-85724800	Strong transcription	Placenta	Placenta
35	chr4:85719800-85724600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:85719800-85724800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:85720000-85724400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr4:85720000-85725000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:85720200-85724000	Strong transcription	Fetal Stomach	stomach
40	chr4:85720200-85724600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:85720600-85724600	Strong transcription	Adipose Nuclei	Adipose
42	chr4:85720600-85724600	Strong transcription	Fetal Muscle Leg	muscle
43	chr4:85720800-85725400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:85721200-85724600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:85721200-85724600	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr4:85721200-85724600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr4:85721400-85724000	Strong transcription	Fetal Intestine Small	intestine
48	chr4:85721400-85724200	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr4:85721400-85724600	Strong transcription	Fetal Intestine Large	intestine
50	chr4:85721400-85724800	Strong transcription	Skeletal Muscle Female	skeletal muscle

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