Variant report

Variant	rs6839516
Chromosome Location	chr4:85635879-85635880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10007879	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11097024	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12511112	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13145705	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1385263	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17009247	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17009249	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2170935	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2218323	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098928	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4529041	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6531775	0.84[EUR][1000 genomes]
rs6847067	0.85[EUR][1000 genomes]
rs6858666	0.83[EUR][1000 genomes]
rs7668460	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7685537	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85587800-85648400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:85603800-85643800	Weak transcription	Stomach Mucosa	stomach
3	chr4:85604400-85637600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:85604400-85674800	Weak transcription	Small Intestine	intestine
5	chr4:85605000-85637000	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:85607800-85636000	Strong transcription	Fetal Lung	lung
7	chr4:85611600-85636600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr4:85612600-85639600	Weak transcription	Fetal Heart	heart
9	chr4:85613400-85643000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:85613400-85646200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:85613400-85646600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:85613400-85649400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr4:85613600-85650200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr4:85615000-85677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:85616800-85646600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:85617000-85641800	Weak transcription	Psoas Muscle	Psoas
17	chr4:85619200-85636800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
19	chr4:85619400-85636600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:85619400-85639000	Strong transcription	Adipose Nuclei	Adipose
21	chr4:85619400-85646400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr4:85619600-85638400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:85619600-85646400	Strong transcription	Liver	Liver
24	chr4:85620000-85636000	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:85620200-85640000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:85620200-85648000	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:85620800-85663400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:85621600-85636600	Strong transcription	Fetal Intestine Large	intestine
29	chr4:85621600-85636800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:85623200-85640400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:85625000-85646600	Strong transcription	Placenta	Placenta
32	chr4:85625200-85641600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:85625600-85636400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:85626800-85641600	Weak transcription	NHEK	skin
35	chr4:85626800-85641800	Weak transcription	HMEC	breast
36	chr4:85627800-85646800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:85628800-85641600	Weak transcription	Aorta	Aorta
38	chr4:85628800-85641600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr4:85628800-85641600	Weak transcription	Spleen	Spleen
40	chr4:85628800-85642000	Weak transcription	Gastric	stomach
41	chr4:85629200-85662400	Weak transcription	Colonic Mucosa	Colon
42	chr4:85630000-85638600	Weak transcription	Ovary	ovary
43	chr4:85630000-85641200	Weak transcription	NHLF	lung
44	chr4:85630000-85641400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr4:85630000-85641600	Weak transcription	Pancreas	Pancrea
46	chr4:85630000-85641800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr4:85630000-85656400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:85630000-85659000	Weak transcription	Right Ventricle	heart
49	chr4:85630200-85639800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr4:85630200-85639800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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